CHEN 3701 Lecture Notes - Lecture 18: Birdwatching, Ratia

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Assume independent interactions - the presence (or absence) of bound a has no imact on the intrinsic affinity (energetics) of other binding events. Protein doesn"t change structure in any way such that having certain # of a bound affects the next binding that can happen. 3 binding sites, so a can bind independently to any site. = n choose i = n = # possible binding sites, valency i = # of bound a molecules in the state w/ more a bound might want to know ratio. Chen3701_biomolecularengineering page 3 might want to know ratio. Sometimes though, binding in previous step affects binding in next step. A is the thing you"re trying to deliver to the target. Plot slope = n y-intercept = -ln{kd) observed n = hill coefficient = -> = observednot the true known valency/# of binding sites. Chen3701_biomolecularengineering page 5 this isn"t going to work no matter how favorable the intrinsic chemistry is.

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