BIOLOGY 285 Study Guide - Quiz Guide: Arginine, Hydrophobic Effect, Ice Pack

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Question 1 draw two amino acids sitting side by side unbonded, then draw them with a peptide bond connecting them. Two amino acids connect through a dehydration reaction resulting in a peptide bond between them and a water molecule. Why is its classification a bit ambiguous (it is sometimes classified as non-polar)? (hint: discuss the chemistry of the r group) Tyrosine is a polar amino acid because the r-group contains an. Oh group that allows it to participate in hydrogen bondings. Its classification is a bit ambiguous because the r-group has both polar and non-polar characteristics: draw another amino acid. Say something about the chemistry of its r group (categorization, types of interactions it would make in different levels of structure, etc). This is a structure of alanine, a non-polar (hydrophobic) amino acid. The r group will not do much in primary structures since only the backbone is connected by peptide bonds.

Related Questions

Tyrosine has a polar side chain because:
a.) It is asymmetrical
b.) It has two types of atoms that have large differences inelectronegativity
c.) It is symmetrical
d.) both a and b
e.) both b and c

2. Consider the amino acid T at pH 9.23. Its alpha carboxyl grouphas a pKa of 2.63. What is the ratio of
base to acid for this group at this pH?
a.) 1:1
b.) 45637:1
c.) 2,634,678:1
d.) 3,981,072:1
e.) 9,364,345:1

3. Which statement about pKa is not true?
a.) It represents a pH at which 50% of the titratable group is inthe acid form and 50% is in the
base form.
b.) If the pH is less than the pKa, more than 50% of the titratablegroups are unprotonated.
c.) If the pH is greater than the pKa, more than 50% of thetitratable groups are in the base
form.
d.) If the pH is less than the pKa, more than 50% of the titratablegroups are in the acid form.
e.) All of the above are true.

4. At what approximate pH will D most likely exist as azwitterion?
a.) 3.0
b.) 4.0
c.) 5.0
d.) 6.0
e.) 7.0

5. Cysteine is the only amino acid that can form covalent bondswith other amino acids (i.e. cysteine)
through its side chain.
a.) true
b.) false

6. At pH 2, will the R group of H likely be charged OR uncharged?

Unit 2 Organic Chemistry

Organic compounds vs. Inorganic compounds

What makes a compound organic? Inorganic?

Functional groups (phosphate groups, amino groups, carboxyl groups)

Know the structure of each of these groups, and which organic compounds they are found in. You can draw them for your own use.

Hydrolysis

What is it? What is it used for?

Dehydration synthesis

What is it? What is it used for?

Carbohydrates (Monosaccharides, Disaccharides, Polysaccharides and examples)

Know the process of joining two monosaccharides together to create a disaccharide.

Be able to give examples of several monosaccharides, disaccharides and polysaccharides.

Monosaccharide examples (3)	Disaccharide examples (2)	Complex carbohydrates (3)

Lipids (Saturated vs. Unsaturated; Phospholipids, Steroids)

Define a saturated fatty acid.

Define an unsaturated fatty acid. Draw if it helps.

What process is used to put the fatty acid chain on a glycerol molecule?

Hydrophilic vs. hydrophobic

Define hydrophilic.

What part of the phospholipid is hydrophilic?

Define hydrophobic.

What part of the phospholipid is hydrophobic?

Proteins, types and functions

What is a protein composed of, and what does it do?

Amino acids

Name the three parts of the amino acid that come off the common Carbon.

Identify each of the three parts. (Amino Acid ID game)

Peptide Bonds

How are they formed?

What two parts of each amino acid do they join together?

Enzymes - define.

Levels of Protein structure

Complete the chart below.

Protein structure level	definition
Primary
Secondary
Tertiary
Quarternary

Protein Denaturation

What is it and how does it happen?

Define what a Solute is.

Define what a solvent is

Nucleic acids (DNA, RNA, ATP)

Nucleotide

Name its three parts and be able to identify each of them on a diagram. (Nucleotide ID game)

What are the two possible sugars used in a nucleotide?

Complete the Table below.

	DNA	RNA	ATP
What sugar does it have?
What nitrogen bases does it have?
Provide the pairings of the nitrogen bases of each nucleic acid			N/A
What is its structure?

Is DNA a protein if so what makes up proteins, if not what it is and what are its monomers called? Describe the primary, secondary, tertiary, and quaternary structure of DNA (this sub-question is independent of the answer to the first question).

Describe electrostatic bonds, covalent bonds, van der Waals interactions, and hydrogen bonds and give an example of each.

Which of the four classes of amino acids has side chains with the greatest hydrogen-bond-forming potential?

Which has the greatest potential to form electrostatic interactions?

Which class has the greatest potential for hydrophobic interactions?

Of the following amino acids, (K), (Y), and (F), which side-chains would you expect to be the most soluble in a polar aqueous solution? Which the least?

Would you agree with the statement that many different amino acid sequences can fold into the same basic tertiary structure? What data can you cite as evidence for your position?

BIOLOGY 285 Study Guide - Quiz Guide: Arginine, Hydrophobic Effect, Ice Pack

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