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Class Notes for Bioinformatics at McGill University

Bioinformatics
BINF 511
Martina Stromvik
Bioinformatics
BINF 511
Martina Stromvik
Bioinformatics
BINF 511
Martina Stromvik
Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture 1: BIOL 540
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Ecology of Species Invasion (January) Lecture 1 - January 8 2018 Non-native, Non-indigenous, Alien, Exotic Species Species introduced to a region outside its natural historical range Biological Invasion S...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 7: Working Directory, Common Chimpanzee, Western Gorilla
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Lecture 7: Python Lecturer: Maria Kyriakidou February 21, 2018 Important things to know from this lecture String manipulation How to use open() function to read and write files How to create, lists,...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 12: Cytosine, Alternative Splicing, Biological Process
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Lecture 12: Wrap up April 11, 2018 Regarding the final exam 9 am on April 25th Centennial Centre, Ballroom Cumulative Similar layout as the midterm 1-1.5 hours, but will have the whole...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 8: Chromatin, Database Tuning, Cellular Component
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Lecture 8: Gene and genome annotation; Databases March 14, 2018 The only items that are worth noting and didnt come from slides: For the final exam, dont need to know the names of the software, just need to know ...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 11: De Bruijn Graph, Sequence Assembly, Contig
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Lecture 11: Genome assembly; Extra lab April 4, 2018 Lecture portion: Introduction to genome assembly (lecturer: Maria Kyriakidou) Genome assembly is a hierarchical data structure that maps the sequence data to a ...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 9: Chromatography, Metabolomics, Sanger Sequencing
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find more resources at oneclass.com Lecture 9: Midterm feedback; Lab 4 March 21, 2018 Midterm feedback Overall, everyone did well. The class average was above 90. Below are concepts that many people missed: o Identity = sa...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture 2: BINF 511 No Lecture 07Feb2018
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find more resources at oneclass.com No lecture; worked on Lab 2 (command line sequence analysis) February 7, 2018 find more resources at oneclass.com

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture 2: BINF 511 Midterm (no lecture) 28Feb2018
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find more resources at oneclass.com Midterm exam Watched the movie Gattaca afterwards No lecture February 28, 2018 find more resources at oneclass.com

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture Notes - Lecture 2: Omics, Cytoscape, Heat Map
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Lecture 2B: Metabolomics - Principles and Applications in Systems Biology (Konstantinos Aliferis - Guest Lecturer) January 17, 2018 Introduction in metabolomics Metabolomics: comprehensive qualitative and quantita...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture 4: BINF 511 Lecture 4A 31Jan2018
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Lecture 4A: Genomic strategies and data January 31, 2018 Sequencing strategies One gene of interest at a time how long will this take? Whole genome sequencing expensive! o Shotgun approach Random large fragments Ends of ...

Bioinformatics
BINF 511
Martina Stromvik
BINF 511 Lecture 1: BINF 511 Lecture 1 10Jan2018
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Lecture 1: Introduction to the course January 10, 2018 Some course information BINF 511: Bioinformatics for Genomics Martina V. Stromvik (Department of Plant Science) Martina.stromvik@mcgill.ca Office hours: Wednesdays 12:...

Bioinformatics
BINF 511
Martina Stromvik

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