BIOL 3581 Lecture 6: Biotechnology Lecture 6

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Need to label what was found in terms of fragmentation data as well as what parts of the fingerprint you are identifying. Spot it on the plate for maldi. Initially, linear spectra is produced: fingerprint structure. The mass fingerprint is the mass of the individual peptides after cleavage: that gives us some information for protein identification. With this data, you can take individual peptides and compare them with the database. It is not completely unambiguous because the peptides may be the same as other proteins that are very similar. If you have a program where you take the human genome. Observed values are compared to calculated values. Databases consist of every single gene that is translated in silico to a protein sequence and theoretically cleaved with trypsin. For every protein, you see the potential values if you cleave with trypsin. Every protein will have a set of mass values that will be generating if the protein is cleaved with trypsin.

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