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Lecture 1

BSCI 223 Lecture Notes - Lecture 1: Enterobacteriales, Gammaproteobacteria, Enterobacteriaceae


Department
Biological Sciences Program
Course Code
BSCI 223
Professor
mciver
Lecture
1

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PHYLOGENETIC REPORT C
TABLE 1: Results from rDNA Analysis for Organism C
Organism Name:
S_ab score Domain Family Genus Species
1.00 Bacteria Enterobacteriaceae Escherichia/Shigella Escherichia/Shigella
Coli
Lineage: Results for Query Sequence: seqmatch_seq, 1352 unique oligos
rootrank Root (20) (match sequences) domain Bacteria (20)
phylum "Proteobacteria" (20) class Gammaproteobacteria (20)
order "Enterobacteriales" (20)
family Enterobacteriaceae (20)
genus Escherichia/Shigella (20) S000004313
not_calculated 1.000 1352 Escherichia/Shigella coli (T); ATCC 11775T;
X80725 S000653072 not_calculated 0.981 1459 Escherichia
coli UTI89; CP000243 S000653076
not_calculated 0.981 1459 Escherichia coli UTI89; CP000243
S000857271 not_calculated 0.982 1411 uncultured bacterium; 16saw44-
1h03.p1ka; EF604191 S000857273
not_calculated 0.982 1419 uncultured bacterium; 16saw44-1c07.q1ka;
EF604193 S000857275 not_calculated 0.981 1419
uncultured bacterium; 16saw44-1b03.q1ka; EF604195
S001239575 not_calculated 0.981 1459 Escherichia coli S88;
CU928161 S001239578 not_calculated 0.984 1457
Escherichia coli S88; CU928161 S001239582
not_calculated 0.981 1460 Escherichia coli S88; CU928161
S002165418 not_calculated 0.981 1459 Escherichia coli IHE3034;
CP001969 S002165421 not_calculated 0.982 1459
Escherichia coli IHE3034; CP001969 S002165425
not_calculated 0.981 1459 Escherichia coli IHE3034;
CP001969 S002221464 not_calculated 0.981 1467
Escherichia coli UM146; CP002167 S002221469
not_calculated 0.981 1467 Escherichia coli UM146; CP002167
S002288238 not_calculated 0.981 1459 Escherichia coli UTI89;
CP000243 S002288328 not_calculated 0.981 1459
Escherichia coli UTI89; CP000243 S002289958
not_calculated 0.984 1457 ; CP000468 S002970776
not_calculated 0.982 1419 uncultured bacterium; 16saw46-2c05.p1k;
HE582416 S002970837 not_calculated 0.984 1416
uncultured bacterium; 16saw46-1a08.q1k; HE582477
S002970838 not_calculated 0.984 1416 uncultured bacterium; 16saw46-
2a04.p1ka; HE582478
TABLE 2: Background information relevant to organism A revealed from library research
Topics/
Questions
Pertinent
Information
Source of Information
BSL level
required when
working with
the organism:
1, 2
(Pathogenic
Strain)
http://bio.research.ucsc.edu/Safety/colihaz.html
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