MCB 3020 Lecture Notes - Lecture 11: Paracoccus Denitrificans, Deamination, Protease

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scarletminnow29

22 Jun 2021

School

FAU

Department

Microbiology

Course

MCB 3020

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Document Summary

Micro - chapter 11: catabolism: energy release and conservation. The diversity of fueling reactions of microbes is a major driver of their success in all conceivable ecological niches. Classes of major nutritional types (5) can switch depending on environmental conditions: majority of microorganisms known, photolithoautotrophs (photoautotrophs, chemoorganoheterotrophs (chemoheterotrophs, majority of non-photosynthesizing pathogens (bacteria and fungi, ecological importance, photoorganoheterotrophs, chemolithoautotrophs, chemolithotrophs. Atp to make glucose-6-phosphate: isomerization to fructose-6- phosphate, - atp consumed to phosphorylate c1, three carbon phase (6c splits, oxidation step to generate. Atp for each 3c compound: glycolysis summary: glucose + 2adp. + 2pi + 2nad+ 2 pyruvate + 2atp. + 2nadh+ 2h: pentose phosphate pathway, also called hexose monophosphate pathway, can operate at same time as glycolytic pathway or entner- Duodoroff pathway: can operate aerobically or anaerobically, an amphibolic pathway, oxidation steps produce. Nadph needed for biosynthesis: sugar transformation reactions produce sugar needed for biosynthesis, sugars can be further degraded, pentose phosphate summary: g6p.

Related Questions

1. Bacteria _______________ oxidize inorganic or organic chemical compounds to obtain their energy and _______________ derive their energy from sunlight.

2. If an organism uses CO2 as a carbon source it is _____________________, but if it extracts its carbon from organic compounds it is _____________________.

3. The vast majority of bacteria use ___________ _____________ as an energy source, _______________ ____________ as a carbon source and ____________ _____________ as a source of electrons and hydrogens because they are _________________________________.

4. If a bacterium that uses light and organic compounds to obtain its other nutrients is __________________________________, but if it uses light and CO2 as a carbon source it is ____________________________.

5. Fungi and most protozoa due to their C, energy and electron requirements are classified as _______________________________.

6. Bacteria that oxidize chemical compounds to obtain their energy and obtain their source of carbon and electrons from organic compounds say that they are ________________________.

7. Bacteria that oxidize inorganic chemical compounds to obtain their energy and electrons, but use CO2 as a carbon source are _______________________________.

8. Cyanobacteria are _________________________ because they use __________ as a source of energy, _____________ as a carbon source and _______________ as a source of electrons and hydrogen.

9. Nutrition in most bacteria occurs mainly by ___________________.

10. Most bacteria reproduce by _____________________, but some can be reproduced alternately by _______________ or ______________________.

Phototrophs need an electron source like H₂S orH₂O. Where do the electrons from these sources go?(Assume the organism is growing autotrophically as well astophototrophically.)

	O₂ and CO₂
	O₂ only
	CO₂ only
	Sulfate or oxygen
	Inorganic various molecules, depending on cellular needs.

Which of the following statements about chlorophyll istrue?

	It is a good electron acceptor in its oxidized form.
	It is a good electron donor in its reduced form when energizedby light.
	It contains magnesium.
	It is a tetrapyrrole.
	All of the above

The unifying feature of all photosynthetic organisms isa(n)

	electron transfer chain.
	electron donating system to generate NADPH.
	ATP-generating system.
	light-gathering system.
	All of the above

Evidence suggests that banded iron formations are due to

	chemical oxidation of reduced iron, Fe²⁺.
	aerobic reduction of insoluble ferric iron, Fe(OH)₃.
	anaerobic oxidation of soluble ferrous iron,Fe²⁺.
	Both a and b
	Both a and c

In addition to their ability to harvest light in the 400 to 500nm range, carotenoids also

	eject electrons from the reaction center.
	function as a tetrapyrrole.
	intercept toxic single-state oxygen.
	transfer electrons to ubiquinone.
	raise electrons to a higher energy state.

Ribosomal RNA and other cell features affirm that living cellsshould be divided into three groups called domains.

	True
	False

Microbes have started to evolve recently.

	True
	False

The ________ was essential for the evolution of oxygenicphotosynthesis.

	evolution of cyanobacteria
	development of photosystem I
	ability to extract electrons from CO₂
	ability to extract electrons from H₂O
	ability to use oxygen as the terminal electron acceptor

What do oxygenic phototrophs use as an electron source?

	Oxygen
	Sulfide
	Water
	Organic compounds
	CO₂

10.

Three domains of organisms have been established basedprimarily on size and other structural features of the cells.

	True
	False

fuchsiasea-lion54

Microbiology Unit 2 Applied and Environmental Assignment Part 1: Identify Nutritional requirements from Chapter 6&14 (and review from chapters 1 & 2) 1. Determine which of the 4 macromolecules require the following elements: a. Carbon: carbohydrates___ lipids___ proteins___ nucleic acids___ b. Nitrogen: carbohydrates___ lipids___ proteins___ nucleic acids___ c. Sulfur: carbohydrates___ lipids___ proteins___ nucleic acids___ 2. The essential elements mentioned above are cycled through cells and the earth in biogeochemical cycles (the carbon, nitrogen, and sulfur cycles.)Select the correct answer or fill in the blanks to summarize these cycles: a. Carbon dioxide is taken in from the atmosphere by [autotrophs/heterotrophs] and converted to glucose through carbon ________________. When heterotrophs eat autotrophs they use catabolism to break down glucose to make ATP and waste carbon is released as ___________. b. There is plenty of nitrogen available in the atmosphere but it is not accessible to organisms because it is in the form of Nitrogen gas (N2). N2 is fixed by [bacteria/plants/animals] and converted to ammonia (NH3.) NH3 can be used by [bacteria/plants/animals] to build their cells. Next, by consuming food with amino acids,[bacteria/plants/animals] can get access to nitrogen for their own cellular needs. c. There is also a good quantity of sulfur in dirt, rocks, and the atmosphere. Sulfur cycles between H2S => S0 => SO4 => SH groups in Proteins => back to H2S.Using _________________ respiration, anoxygenic photosynthesis, and chemolithoautotrophy [bacteria/plants/animals]convert H2S and S0 to SO4 which is taken in by [bacteria/plants/animals] and used to build their cells. When [bacteria/plants/animals]eat plants they take in essential amino acids containing sulfur and recycle these to make their proteins. d. _________________ break down waste and dead organisms and recycle nutrients back into the cycles. *The C and N are summarized here: https://youtu.be/2D7hZpIYlCA and https://youtu.be/leHy-Y_8nRs 3. Match the main metabolic classifications to the description: Classifications: photoautotroph/ photoheterotroph/ chemoautotroph/ chemoheterotroph o A microbe that makes its own food by taking carbon from CO2 in the atmosphere and its energy from sunlight o A microbe that makes its own food by taking carbon from CO2 in the atmosphere and its energy from reduced inorganic chemicals o A microbe that eats other organisms to get organic carbon and energy o A microbe that eats other organisms to get organic carbon but gets energy from sunlight 4. Identify the phases of the bacterial growth curve and define what occurs in each phase Phase A = ______________ Definition: Phase B = ______________ Definition: Phase C = ______________ Definition: Phase D = ______________ Definition: Part 2: Unique ecosystems containing microbes 5. Watch the video that shows hydrothermal vents: https://youtu.be/RO3nO98gH_M a. Describe bacteria that live at the vents using terms from the unit 2 reading guide: ________________________________________________________________________ b. Write a 2-3 sentence reflection about hydrothermal vents and the contribution of microbes to this ecosystem: 6. Apply what you have learned to the TED-Ed video about Biofilms: https://youtu.be/pHLP5CZMnL4 a. Give the terms for cell structures mentioned in the video that we learned in Chapter 4 and 7: i. âsticky appendagesâ thatallows bacteria to attach and begin the biofilm: _______________ ii. Extracellular matrix/gooey matrix that holds cells together: ____________________________ iii. Exchange genetic information while packed together: ____________________________ iv. Communicate with each other by _________________________________________ sensing. v. Produce chemical to kill microbial competitors: ____________________________ factor.

MCB 3020 Lecture Notes - Lecture 11: Paracoccus Denitrificans, Deamination, Protease

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