Biology 1225 Chapter Notes - Chapter 6: Complementary Dna, Prokaryote, European Route E6

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5 Feb 2014

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Assume that a section of dna has the following base sequence on one strand, and use this information in your answer. Base sequence: tag cct agc tct write the complementary dna sequence that is formed from the above sequence by dna polymerase. Assume that the base sequence of dna in question 1 is used by a cell to make mrna. Write the base sequence of the mrna that would be formed from that sequence by rna polymerase. As well as dna, eukaryotic chromosomes (but not prokaryotic) contain large amounts of ___________ ___________ in their structure, which plays a vital role in the folding and coiling of the dna. Select from the following list (a, b, c, d or e) to answer the questions 3 to. Answers: for base sequence: tag cct agc tct the complementary strand is. For base sequence: tag cct agc tct in dna the mrna synthesized is.

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5. Alpha amanitin is a drug that binds RNA polymerase andprevents it from functioning in the cell (this is the compound thatis found in poison mushrooms). The reason people die when theyconsume alpha amanitin is:

a) Alpha amanitin prevents gene expression from occurring in thecell

b) DNA replication is directly inhibited by alpha amantin

c) Alpha amanitin binds tightly to the messenger RNAs that aremade in the cell, preventing translation

d) Alpha amanitin binds to nuclear pores preventing thetransport of messenger RNA into the cytoplasm

6. In order for transcriptional initiation to begin in E. colithe following elements are needed:

a) an origin and RNA polymerase

b) initiator protein and a promoter

c) the sigma subunit of RNA polymerase and an RNA template

d) RNA polymerase and a promoter

e) helicase and primase

Questions 7 and 8. You are studying two species of closelyrelated snakes, one species lives in sandy desert area and has paletan skin and the species lives in a volcanic rock area and has darkbrown skin. You a sequence the DNA from each type of snake anddiscover a gene encoding a protein that transports pigment into theskin cells. The pigment transporter protein is responsible for skincolor. When you analyze the DNA coding sequence of the pigmenttransporter from each snake you find these two DNA sequences (hashmarks have been added to indicate the reading frame):

pale tan snake: GCG/TTG/GAC/TGC/ACC (DNA template strand)CGC/AAC/CTG/ACG/TGG (complementary strand) dark brown snake:ACG/TTG/GAC/TGC/ACC (DNA template strand) TGC/AAC/CTG/ACG/TGG(complementary strand)

7. From these sequences you conclude:

a) that the amino acid sequence of the pigment transporters forthe two proteins are almost identical

b) that the amino acid sequence of the pigment transporters forthe two proteins are very dissimilar

c) that the amino acid sequence of the pigment transporters forthe two proteins are identical

8. Since the skin color is different in each snake, you concludefrom the sequence data above that:

a) the genetic code in the skin cells in each of these snakes isdifferent

b) the DNA sequence encoding the entire gene for pigmenttransporters in these two snakes is different

c) that one of the codons in the gene for the pigmenttransporter in these two snakes is different

9. You are analyzing eukaryotic cells that have been exposed tothe radioactive uracil. In most cells the radioactive uracil isinitially localized in the nucleus and then moves from the nucleusto the cytoplasm. However, you observe that in some cells theradioactive molecules stay in the nucleus and never arrive in thecytoplasm. This is most likely a defect in:

a) the transcription of the DNA

b) the processing of the mRNA

c) the translation of the RNA

d) the labeling of the RNA

e) the replication of the DNA

10. Which of the following is true of both eukaryotic andbacterial transcription? (select all that are true)
a) Transcription factors must bind the promoter before RNApolymerase initiates transcription

b) Messenger RNAs must be spliced before translation begins inorder to produce the appropriate gene product

c) During transcription only one DNA strand is used as atemplate to make the messenger RNA

d) Termination of transcription occurs when the RNA polymerasetranscribes a hairpin structure in the RNA followed by a string ofU

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1. (a) What is the structural differencebetween all deoxyribonucleotides and all ribonucleotides and whydoes this make DNA more appropriate to act as the genetic materialthan RNA. (4 points)

(b) Why is uracil replaced by thymine in DNA? (4 points)

(d) The two strands in DNA are antiparallel. What does thismean? (4 points)

(e) Why are they antiparallel? (4 points)

2. A single stranded DNA molecule has thefollowing sequence: 5'-GGTTAGGTTAGGTTAGGTTA-3'

(a) To fully replicate this molecule, what is the sequence ofthe primer that must be synthesized by the primase enzyme (assume aprimer length of 5 bp). (Here and below write how you wouldconventionally write a single stranded DNA sequence, i.e. withoutthe template.) (4 points)

(b) When fully replicated, what is the sequence of the newlysynthesized DNA strand? (4 points)

(d) What is the sequence of what would be synthesized in theabsence of DNA ligase? (4 points)

(e) What is the total number of H-bonds that are formed duringthe synthesis of the DNA strand (from the very beginning)? (4points)

3. Different temperature sensitive mutants ofE. coli in genes encoding proteins involved in replication weregrown at the permissive temperature for several generations andwhile still actively growing the temperature was raised to therestrictive temperature. After raising temperature, the synthesisof new DNA was assessed using radioactively labeled nucleotides.Assume the mutations completely inactivate the proteins at therestrictive temperature and that function of the mutant protein wasabolished instantly temperature was raised. Would any new DNA bedetected in the following mutants after raising thetemperature?

(4 points each) (a) DnaA

(b) DNA helicase

(d) DNA pol I

(e) DNA pol III

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Which of the following is NOT a direct consequence of the fact that DNA polymerase can only build onto the end of an existing nucleic acid?

Question 6 options:

	DNA replication requires primers
	Bits of DNA are lost from the ends of your chromosomes in each successive round of replication
	RNA is involved in DNA replication
	The enzyme "primase" is needed for DNA replication
	There are multiple origins of replication on each eukaryotic chromosome

How does a nucleotide sequence code for a protein in nearly all living organisms?

Question 7 options:

	a sequence of 3 nucleotides can code for one of 64 different amino acids
	a sequence of 2 nucleotides can code for one of 64 different amino acids
	a sequence of 2 nucleotides can code for one of 20 different amino acids
	a sequence of 3 nucleotides can code for one of 20 different amino acids
	a sequence of 3 nucleotides can code for 3 different amino acids

Fill in the blanks. To make one strand of DNA, _________ monomers are linked together in a chain, forming a polymer we call a(n) ________ .

Question 8 options:

	nitrogenous bases, hydrogen bond
	nucleotide, nucleic acid
	amino acid, nucleic acid
	nucleotide, nitrogenous base
	amino acid, protein

Which of the following was NOT part of the ideas that Darwin used in his book On the Origin of Species?

Question 9 options:

	organisms vary in characteristics that affect survival and reproduction
	variation in traits is often heritable
	descent with modification explains life's unity and life's diversity
	organisms inherit characteristics from their parents that the parents acquired in their own lifetimes
	natural selection is a cause of adaptive evolution

Here is a hypothetical mRNA sequence:

5' G G A U G C U A G U A U G A 3'

What is the amino acid sequence encoded by this mRNA?

Question 10 options:

	Met-Ile-Val
	Asp-Ala-Ser-Met
	Met-Leu-Val
	Ser-Met-Ile-Val
	Gly-Cys

Biology 1225 Chapter Notes - Chapter 6: Complementary Dna, Prokaryote, European Route E6

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