BIO1011 Chapter Notes - Chapter 1.1; 2.1-2.3; 3.1-3.2; 4.1-4.2; 5.1-5.5: Covalent Bond, Hydrogen Atom, Hydrogen Bond

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Pre-reading notes:

References:

Concepts: 1.1; 2.1-2.3; 3.1-3.2; 4.1-4.2; 5.1-5.5 from Campbell Biology

Objectives

● Understand hierarchy in structural and functional levels in biology

● Understand properties associated with life

● Define element and compound

● Describe structure of an atom and explain atomic number and mass, valence,

and daltons

● Define electronegativity and explain its role in formation of chemical bonds

● Distinguish between covalent, ionic and weak bonds

● Describe how water contributes to the ability of the environment to support life

● Describe the structure and geometry of a water molecule

● Explain the relationship between the polar nature of water and its ability to

form hydrogen bonds // - lecture 1

● Distinguish between the monomers that make up macromolecules and the

bonds that link monomers

● List the roles of proteins in organisms

● Understand the primary, secondary, tertiary and quaternary structure of

proteins

● Provide examples of monosaccharides and disaccharides

● Provide examples of structural and storage polysaccharides

● Define a nucleotide and give examples of biologically important nucleotides

● Define the classes of lipids and understand their functions and biological

importance

● List the basic units that make up glycerides and steroids

● Understand the concept of scale in biological systems - from organelle to cell

to tissue to organ // - lecture 2

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Lecture 1 Pre-Reading - Hierarchy of structural and functional

levels

The Hierarchy

The Biosphere → Ecosystems → Communities → Populations → Organisms → Organs

and Organ Systems → Tissues → Cells → Organelles → Molecules

● Zooming in from the biosphere to molecules is called reductionism

● Zooming out from molecules to the biosphere is called systems biology

● Emergent properties show as we zoom out to see the complexity in the

interactions in systems biology

● In each hierarchy, there is a correlation between structure and function

Properties associated with life

● Metabolic processes

● Respiration

● Nutrition

● Reproduction

● Homeostasis

● DNA, RNA and Proteins

● Carbon-based

● Growth

Element and Compound

● Element: a substance that cannot be broken down by other substances in a

chemical reaction

● Compound: a substance that consists of two or more elements combined in

a fixed ratio

○ A compound has different characteristics to those of the element it

contains

● Of the 92 natural elements, only about 20-25% are essential elements than

an organism needs to survive

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Document Summary

Concepts: 1. 1; 2. 1-2. 3; 3. 1-3. 2; 4. 1-4. 2; 5. 1-5. 5 from campbell biology. Understand hierarchy in structural and functional levels in biology. Describe structure of an atom and explain atomic number and mass, valence, and daltons. Define electronegativity and explain its role in formation of chemical bonds. Distinguish between covalent, ionic and weak bonds. Describe how water contributes to the ability of the environment to support life. Describe the structure and geometry of a water molecule. Explain the relationship between the polar nature of water and its ability to form hydrogen bonds // - lecture 1. Distinguish between the monomers that make up macromolecules and the bonds that link monomers. List the roles of proteins in organisms. Understand the primary, secondary, tertiary and quaternary structure of proteins. Provide examples of structural and storage polysaccharides. Define a nucleotide and give examples of biologically important nucleotides. Define the classes of lipids and understand their functions and biological importance.

Related Questions

I JUST NEED SIMPLE/BASIC ANSWERS NOT LONG ANSWERS

1. Explain how life can be viewed at different levels of biological complexity.

2. Explain how researchers study biology at different levels, ranging from molecules to ecosystems.

3. Distinguish between discovery-based science and hypothesis testing, and describe the steps of the scientific method.

4. Tell whether a given topic or research study is about biology. Tell whether that study is discovery-based or hypothesis testing, or both.

5. If presented with a research study, propose what the Research Question was.

6. If presented with an example, tell whether a statement is a hypothesis, theory or law and why you think so.

Describe the general structure of atoms and their constituent particles.

Relate atomic structure to the periodic table of the elements. List the elements that make up most of the mass of all living organisms.

Explain how a single element may exist in more than one form, called isotopes, and how certain isotopes have importance in human medicine.

Compare and contrast the types of atomic interactions (bonds) that lead to the formation of molecules.

Tell which atoms and how many of each make up a given molecule (formula or diagram).

For a bond in a given molecule, tell whether the bond is covalent, and if it is, tell whether it is polar or nonpolar and why you think so.

Explain the concept of electronegativity and how it contributes to the formation of polar and nonpolar covalent bonds. Tell whether a given atom is electronegative or not, and why you think so. Label partial charges in a polar bond.

Draw five water molecules and label the atoms and bonds within and between the 5 molecules.

Describe how hydrogen bonding determines many properties of water.

List the properties of water that make it a valuable solvent, and distinguish between hydrophilic and hydrophobic substances.

Explain how water has the ability to ionize into hydroxide ions (OH^â) and into hydrogen ions (H⁺), and how the H⁺ concentration is expressed as a solution's pH.

Explain the properties of carbon that make it the chemical basis of all life.

Describe the variety and chemical characteristics of common functional groups of organic compounds.

Diagram how small molecules may be assembled into larger ones by dehydration reactions and how hydrolysis reactions can reverse this process.

List the four major classes of organic molecules and macromolecules found in living organisms

If shown a molecule, tell whether it is organic or not and how you know.

If shown an organic molecule, tell whether it is an amino acid, nucleotide, fatty acid, steroid, monosaccharide or disaccharide and how you know.

Distinguish among different forms of carbohydrate molecules, including monosaccharides, disaccharides, and polysaccharides.

Relate the functions of plant and animal polysaccharides to their structure.

List the several different classes of lipid molecules important in living organisms.

Diagram the structure of a triglyceride and explain how it is affected by the presence of saturated and unsaturated fatty acids. Explain why some fats are solid at room temperature, and others are liquid.

Discuss how fats function as energy-storage molecules.

Apply knowledge of the structure of phospholipids to the formation of cellular membranes.

Describe the chemical nature of steroids and give an example of their biological importance.

Give examples of the general types of functions that are carried out in cells by different types of proteins.

Explain how amino acids are joined to form a polypeptide, and distinguish between a polypeptide and protein.

Describe the levels of protein structure and the factors that determine them. If shown a protein diagram, label parts that represent its levels of structure. Tell what kind of research techniques are used to determine protein structure.

Outline the bonding forces important in determining protein shape and function.

Explain what domains are and their importance in proteins.

Describe the three components of nucleotides.

Distinguish between the structures of DNA and RNA.

Tell how certain bases pair with others in DNA and RNA.

Discuss the 4 major categories of organic macromolecules found in living things, including structure, function and location of each.

Compare and contrast the general structural features of prokaryotic and eukaryotic cells.

Outline the differences in complexity among bacteria, animal, and plant cells.

Describe how a eukaryotic cell can be viewed as four interacting systems: the nucleus, cytosol, endomembrane system, and semiautonomous organelles.

Explain how the proteome underlies the structure and function of cells.

Analyze how cell size and shape affect the surface area/volume ratio.

Identify the location of the cytosol in a eukaryotic cell and list its general functions.

Describe the three types of protein filaments that make up the cytoskeleton. Identify which underlie cilia, flagella, centrioles, the nuclear lamina, and the brush border. Tell which are readily assembled and disassembled. Tell which are involved in various cell shape changes or movements.

Explain how motor proteins interact with microtubules or actin filaments to promote cellular movement.

Describe the structure and organization of the cell nucleus. Describe the structure and function of nuclear pores.

Outline the structures and general functions of the components of the endomembrane system.

Distinguish between the rough endoplasmic reticulum and the smooth endoplasmic reticulum.

Identify three important functions of the plasma membrane.

Tell why mitochondria and chloroplasts are called semi-autonomous organelles.

Discuss the evidence for the endosymbiosis theory.

Outline the structures and general functions of mitochondria and chloroplasts.

Explain how proteins are moved via vesicles through the endomembrane system.

If you are told about the function of a specific protein, tell where and in what type of cell that protein might be found.

Sketch and label a âtypicalâ animal cell and a real animal cell such as a red blood cell or a muscle cell. Tell how it might be different than the âtypicalâ cell in terms of its organelles and shape.

Sketch and label a âtypicalâ plant cell and a real plant cell such as a root or leaf cell. Tell how it might be different than the âtypicalâ cell in terms of its organelles and shape.

Describe the fluid-mosaic model of membrane structure. Tell why membranes are described as âfluid mosaicsâ.

Draw 10 phospholipid molecules as they would be arranged in a bilayer. Label the hydrophobic and hydrophilic parts.

61. Name all the places in a cell where membranes are found.

62. Describe at least three different categories of membrane proteins and tell what they do.

63. Describe what determines how fluid membranes are.

64. Explain how lipids are synthesized at the ER membrane.

65. Explain how transmembrane proteins are inserted into the ER membrane.

66. Compare and contrast diffusion, facilitated diffusion, passive transport, and active transport.

67. Explain the process of osmosis and how it affects cell structure.

68. Outline the functional differences between channels and transporters. Compare and contrast uniporters, symporters, and antiporters.

69. Explain the difference between primary active transport and secondary active transport.

70. Describe the structure and function of the sodium-potassium pump in animal cells and a similar pump in plants and prokaryotes.

71. Describe exocytosis and endocytosis and tell what molecules are moved across the membrane by these.

Discuss membrane transport, including its function and various forms and why all membranes have each form.

73. If a given cellular process is described, tell which form of transport might be involved.

List the different categories of animal tissue, providing general functions and specific examples of each.

Name the various organ systems found in many animals, list the components of each, and describe their general functions.

bluebeaver798

BIOL 110 Principles of Biology

1.Describe the structure of a plasma membrane.

2.Define an amphipathic molecule and give an example.

3.Explain the difference between integral and peripheral proteins.

4.Describe the fluid-mosaic model of a membrane.

5.Identify and discuss the function of proteins located in the plasma membrane.

6.Explain the difference between glycoproteins and glycolipids.

7.Why can carbon form chemical bonds with so many elements?

8.Explain the meaning of concentration gradient as it pertains to movement of substances into and out of cells.

9.Explain diffusion and osmosis.

10.What molecule is thought to facilitate the movement of water molecules through a plasma membrane?

11.Explain the difference between active and passive transport across the plasma membrane. Provide examples that occur in the human body.

12.Explain the impact to a cell if placed in a hypertonic solution; include a definition of hypertonic solution and why the change occurs.

13.Identify a similarity and difference between facilitated transport and active transport. Do not state that both move substances across the membrane.

14.Explain the sodium-potassium pump and identify the type of membrane protein involved.

15.Identify and explain the process used by cells to secrete substances.

16.Explain the composition of a plant cell wall and how it differs from the cell wall of a prokaryotic cell.

17.Explain the plasmodesmata and identify the kingdom in which they are found.

18.Define energy and identify the two basic forms of energy.

19.Define entropy.

20.Define metabolism.

21.Explain the difference between exergonic and endergonic reactions.

22.What are coupled reactions and what roles can ATP serve in these reactions?

23.Explain the difference between oxidation and reduction reactions.

24.What is energy of activation?

25.What factors affect the speed of enzymatic reactions?

26.What is an electron transport chain?

27.What occurs at the active site of an enzyme?

28.Define enzymatic inhibition.

29.Define chemiosmosis.

30.Define vitamins and identify their function.

__________ are fairly small organelles that provide a safe place within the cell to carry out certain biochemical reactions that generate harmful, highly reactive oxygen species. These chemicals are both generated and broken down in the same location.

Lysosomes

Endosomes

Peroxisomes

Nucleosomes

Biologists cannot possibly study all living species. Instead, they try to understand cell behavior by studying a select subset of them. Which of the following characteristics are useful in an organism chosen for use as a model in laboratory studies?

rapid rate of reproduction

all of the above

ability to grow under controlled conditions

amenability to genetic manipulation

By definition, prokaryotic cells do not possess __________.

ribosomes.

a nucleus.

membrane bilayers.

replication machinery.

Cell biologists employ targeted fluorescent dyes or modified fluorescent proteins in both standard fluorescence microscopy and confocal microscopy to observe specific details in the cell. Even though fluorescence permits better visualization, the resolving power is essentially the same as that of a standard light microscope because the resolving power of a microscope is limited by the __________ of light.

intensity

absorption

wavelength

filtering

Choose the phrase that best completes this sentence: Microtubules ____________ and are required to pull duplicated chromosomes to opposite poles of dividing cells.

generate contractile forces

can rapidly reorganize

are found in especially large numbers in muscle cells

are intermediate in thickness

Despite the differences between eukaryotic and prokaryotic cells, prokaryotes have proteins that are distantly related to eukaryotic actin filaments and microtubules. What is likely to be the most ancient function of the cytoskeleton?

cell division

cell motility

vesicle transport

membrane support

DNA and RNA are different types of nucleic acid polymer. Which of the following is true of DNA but not true of RNA?

It contains thymine.

It has 5'-to-3' directionality.

It is single-stranded.

It contains uracil.

Double covalent bonds are both shorter and stronger than single covalent bonds, but they also limit the geometry of the molecule because they ____________________.

prevent additional bonds from being formed with the bonded atoms.

limit the rotation of the bonded atoms.

create a new arrangement of electron shells.

change the reactivity of the bonded atoms.

Drosophila melanogaster is a/an __________. This type of animal is the most abundant of all animal species, making it an appropriate choice as an experimental model.

mammal

amphibian

bird

insect

10.

If the isotope 32S has 16 protons and 16 neutrons, how many protons, neutrons, and electrons will the isotope 35S have, respectively?

16, 19, 17

16, 19, 15

16, 19, 16

16, 20, 15

11.

Living systems are incredibly diverse in size, shape, environment, and behavior. It is estimated that there are between 10 million and 100 million different species. Despite this wide variety of organisms, it remains difficult to define what it means to say something is alive. Which of the following can be described as the smallest living unit?

cell

organelle

protein

DNA

12.

Macromolecules in the cell can often interact transiently as a result of noncovalent interactions. These weak interactions also produce stable, highly specific interactions between molecules. Which of the factors below is the most significant in determining whether the interaction will be transient or stable?

the concentration of each molecule

the size of each molecule

surface complementarity between molecules

the rate of synthesis

13.

Many of the mechanisms that cells use for maintenance and reproduction were first studied at the molecular level in bacteria. Which bacterial species had a central role in advancing the field of molecular biology?

E. coli

S. pombe

C. elegans

D. melanogaster

14.

Many types of cells have stores of lipids in their cytoplasm, usually seen as fat droplets. What is the lipid most commonly found in these droplets?

cholesterol

isoprene

triacylglycerol

palmitic acid

15.

Mitochondria contain their own genome, are able to duplicate, and actually divide on a different time line from the rest of the cell. Nevertheless, mitochondria cannot function for long when isolated from the cell because they are __________________.

anaerobes.

viruses.

parasites.

endosymbionts.

16.

Mitochondria perform cellular respiration, a process that uses oxygen, generates carbon dioxide, and produces chemical energy for the cell. Which answer below indicates a correct pairing of material âburnedâ and the form of energy produced during cellular respiration?

17.

Polar covalent bonds are formed when the electrons in the bond are not shared equally between the two nuclei. Which one of these molecules contains polar bonds?

BIO1011 Chapter Notes - Chapter 1.1; 2.1-2.3; 3.1-3.2; 4.1-4.2; 5.1-5.5: Covalent Bond, Hydrogen Atom, Hydrogen Bond

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