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HUMB1000 Lecture Notes - Lecture 5: Citric Acid Cycle, Keto Acid, Fluid Compartments

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peachcrab896
21 Jun 2018
School
Curtin University
Department
Human Biology
Course
HUMB1000
Professor
Ajanthy Arulpragasam

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C5 L1 – Membrane Transport:
The plasma membrane:
- Fluid mosaic model
- It’s the boundary of the cell
- Phospholipid bilayer with the hydrophobic tails in the middle
- Separates intracellular and extracellular
- Attaches cells to other cells and the surrounding cell matrix
- Cells communicate with their environment through the cell membrane
- It’s selectively permeable
- Difference in charge across the membrane is called the membrane potential
- Proteins inserted into lipid bilayer (integral or peripheral)
Channel Protein:
- Tiny channel through the plasma membrane where molecules of a certain size, shape and
charge can pass through
- Non-gated ion channels are always open
- Gated ion channels are opened or closed by certain stimuli
- Passive process
Carrier protein: (transporters)
- Integral proteins move ions from one side of membrane to the other
- Specific binding sites
- Water soluble molecules
- Moving down the gradient, passive
- Protein changes shape to transport ions or molecules
- Resumes original shape after transport
- Uniporters, symporters or antiporters (1 molecule, 2 in same direction, 2 in opposite
direction)
Active transport: (ATP powered transport)
- Requires energy in form of ATP ie. Active and requires enzymes sometimes
- Transports substances AGAINST their concentration gradient so the cell can accumulate
substances
- Eg. Sodium potassium pump (Na+ out and K+ in), uptake of glucose in intestine
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-
C5 L2
–
Diffusion and Osmosis:
Solute is dissolved substance in solution ie. ions
Solvent is the liquid that holds solutes ie. Water
Diffusion:
- Molecules move from areas of high concentration to low until evenly distributed
- Certain specific non-lipid soluble molecules or ions diffuse through membrane channels
(gated or non-gated) but for others, where there isn’t a membrane channel, can’t enter the
cell
- Lipid soluble molecules diffuse directly through the plasma membrane
- Passive
- Eg. Gas exchange
Facilitated diffusion:
- Move large, water soluble molecules or electrically charged molecules across the plasma
membrane
- Amino acids and glucose go in, manufactured proteins go out
- Passive
- Down the concentration gradient
- Takes shape of molecules
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Document Summary

Phospholipid bilayer with the hydrophobic tails in the middle. Attaches cells to other cells and the surrounding cell matrix. Cells communicate with their environment through the cell membrane. Difference in charge across the membrane is called the membrane potential. Proteins inserted into lipid bilayer (integral or peripheral) Tiny channel through the plasma membrane where molecules of a certain size, shape and charge can pass through. Gated ion channels are opened or closed by certain stimuli. Integral proteins move ions from one side of membrane to the other. Protein changes shape to transport ions or molecules. Uniporters, symporters or antiporters (1 molecule, 2 in same direction, 2 in opposite direction) Requires energy in form of atp ie. active and requires enzymes sometimes. Transports substances against their concentration gradient so the cell can accumulate substances. Sodium potassium pump (na+ out and k+ in), uptake of glucose in intestine. Solute is dissolved substance in solution ie. ions.

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Related Questions

True or False? True False
1. Proteins rapidly pass artificial membrane (liposome).--------------------------------------------------------------------------------------( ) ( )
2. Amphiphatic detergent such as SDS spontaneously forms bilayer inwater. ------------------------------------------------------------( ) ( )
3. Cholesterol does have a hydrophilic head and hydrophobic tail.-------------------------------------------------------------------------( ) ( )
4. Fat molecules are one of the major components of the plasmamembrane.------------------------------------------------------------- ( ) ()
5. Phospholipid molecules such as phosphatidylcholine spontaneouslyform bilayer. ----------------------------------------------------( ) ( )
6. Flippase facilitates lateral movement of phospholipids withinthe plane of the membrane.----------------------------------------- ( ) ( )
7. Glycolipids make bilayer less permeable to small water solublemolecules.----------------------------------------------------------- ( ) ()
8. Membrane inner leaflet is enriched with phosphatidylcholine,Sphingomyelin, and Glycolipid. -----------------------------------( ) ( )
9. Plasma membrane proteins can have an enzyme activity.--------------------------------------------------------------------------------( ) ( )
10. A single pass membrane protein must have an amphiphatic alphahelix.-------------------------------------------------------------- ( )( )
11. Plasma membrane proteins can be linked to a lipid molecule atthe outer leaflet of the plasma membrane. --------------------- ( )( )
12. The lateral motility of membrane proteins can be restricted bytight junctions.------------------------------------------------------ ( ) ()
13. Channel proteins have specific binding sites for ions and thusslower than carrier proteins.--------------------------------------- ( ) ( )
14. An antiport would function as a symport if its orientation inthe membrane were reversed. ---------------------------------------( ) ( )
15. A transmembrane pore can be formed by multiple amphipathicalpha helices. ----------------------------------------- ( ) ()
16. Porin proteins form water-filled channels in the outer membraneof a bacterium and are mostly composed of beta sheets. ---- ( ) ()
17. Glucose uniporters localize at the apical side of theintestinal epithelium.------------------------------------------------------------ ( ) ()
18. GAP junction is a selective pore for anions.-----------------------------------------------------------------------------------------------( ) ( )
19. A voltage-gated Na+ channel adopts only two conformationstates: open and closed.----------------------------------------------- ( ) ( )
20. Voltage gated K+ channel opens faster than the Voltage gatedNa+ channels.-------------------------------------------------------- ( ) ()
21. Opening of chloride channel at the synapse will help to fire anaction potential.------------------------------------------------------ ( ) ()
22. The nuclear pore complex forms a gate through which moleculespass the nucleus uni-directionally. -------------------- ( ) ()
23. A completely folded protein is imported into a mitochondrionthrough a large non-selective pore.--------------------------------- ( ) ( )
24. ER signal sequence contains multiple lysine and arginineresidues.----------------------------------------------------------------------( ) ( )
25. The plasma membrane is a sorting station of inward endocyticpathway.---------------------------------------------------------------- () ( )
26. The trans Golgi functions as a sorting station of outwardsecretory pathway.----------------------------------------------------------- ( ) ()
27. Vesicles budding from ER are coated with Clathrin.----------------------------------------------------------------------------------------( ) ( )
28. RabGTPases and tethering proteins are the major specificitydeterminant of vesicle transport system. --------------------------( ) ( )
29. v-SNARE proteins are one of the tethering proteins.------------------------------------------------------------------------------------( ) ( )
30. In secretory cells, the constitutive and regulatory pathways ofexocytosis diverge at the cis Golgi network. ------------------ ( )( )
31. Many proteins are posttranslationally glycosylated at tyrosineresidues in the ER.------------------------------------------------- ( ) ( )
32. Cells import LDL molecules exclusively through pinocytosis.-------------------------------------------------------------------------( ) ( )
33. Cells recycle LDL receptors from lysosome to the plasmamembrane.----------------------------------------------------------------- () ( )
34. Phagosomes fuse with late endosome.------------------------------------------------------------------------------------------------------( ) ( )
35. Small vesicles from ER near the plasma membrane can fuse withthe plasma membrane upon bypassing Golgi apparatus. -- ( ) ()
36. If a Sec mutant showed an accumulation of newly synthesizedproteins at ER,
then the Sec gene is likely a component of vesicle-buddingmachinery of trans-Golgi network.------------------------------------ ( ) ( )
37. A signal recognition particle is a single pass trans-membraneprotein of the ER membrane.---------------------------------------- ( ) ( )
38. Typical animals cells display higher levels of intracellularsodium than extracellular compartments.------------------------------ ( ) ( )
39. Typical animals cells display higher levels of intracellularchloride than extracellular compartments.----------------------------- ( ) ( )
40. The Na-K Pump is a GTPase that can adopt active and inactiveconformational states.----------------------------------------------- ( ) ( )
1. Phospholipase
C-­-ß
produces
phosphatidylinositol
3,4,5-­-trisphosphate
and
diacylglycerol.
(
)
(
)
2. PDGF
activates
GPCR.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
3. Rho
is
an
example
of
heterotrimeric
G
proteins.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­-
(
)
(
)
4. All
members
of
the
G
protein
coupled
receptors
interact
with
small
GTPase
Ras.
-­--­--­--­--­--­--­--­--­--­-
(
)
(
)
5. Adrenaline
is
an
example
of
the
ligands
for
the
RPTK
family.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
6. Ras
GEF
activates
RPTK.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
7. PH
domain
containing
proteins
bind
to
activated
EGFR.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
8. Ligands
for
GPCR
proteins
induce
dimerization
of
the
receptor.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
9. Grb2
is
an
adaptor
protein
that
binds
to
a
phospho-­-tyrosine
residue
of
activated
RPTK
through
a
PH
domain.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
10. When
a
cell
is
expressing
a
large
number
of
dominant
negative
EGFR
proteins,
an
introduction
of
a
constitutively
active
Ras
mutant
will
allow
EGF
signaling.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
11. PI3K
generates
phosphatidylinositol
3,4,5-­-trisphosphate
from
IP3.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
12. Calcium
inhibits
PKC.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
13. cAMP
activates
PKA.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
14. The
MAP
kinase
ERK
inhibits
MAP
kinase
kinases.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­-
(
)
(
)
15. cAMP
is
an
example
of
a
first
messenger.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­----­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
16. All
7-­-Transmembrane
receptors
are
G
Protein
Coupled
Receptors.
-­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
17. Both
Ga
and
Gß
subunits
of
the
heterotrimeric
G
protein
can
mediate
GPCR
signaling.
-­--­--­-
(
)
(
)
18. Both
Ga
and
Gß
subunits
of
the
heterotrimeric
G
protein
have
GTPase
activity.
-­--­--­--­--­--­--­--­--­--­--­--­-
(
)
(
)
19. The
Gas
subunit
of
the
heterotrimeric
G
protein
suppresses
the
function
of
Adenylyl
cylase.
(
)
(

Explain the cell theory; know the three basic tenets of the theory.

All cells have to carry out certain functions, what do all cells have in common?

Compare/contrast an Eukaryotic vs a Prokaryotic cell type.

Understand the concept of selective toxicity. What do all effective targets of an antimicrobial agent have in common? What are some characteristics of Prokaryotic cells that can be targeted?

Explain the unity and diversity of prokaryotic cells in terms of evolutionary theories.

Describe the three basic shapes (morphologies) of bacteria.

What are the functions of the plasma membrane, how does the structure of the plasma membrane aid in carrying out these functions?

Describe the fluid mosaic model of the plasma membrane. Draw out the plasma membrane, include the phospholipid bilayer (indicating polar/hydrophilic and nonpolar/hydrophobic components) and peripheral and integral proteins. Also indicate the intracellular (cytoplasmic) and extracellular regions.

What are the functions of the components of the plasma membrane? Phospholipids, proteins?

Transport. Compare/contrast the following mechanisms of transport in terms of the types of molecules transported, with or against the concentration gradient, if any Energy input is required, if a transport molecule is involved, and if Euk and or Prok use this mechanism.

Osmosis (explain the role of aquaporins)

Diffusion

Facilitated Diffusion

Active transport (proton motive force / ATP binding cassette system)

Group translocation

A set of erythrocytes is placed in a beaker of 0.9% NaCl.Nothing appears to happen to the cells. Why?

0.9% NaCl is hypertonic to the cells.

Sodium blocks the movement of water.

0.9% NaCl is hypotonic to the cells.

0.9% NaCl is iostonic to the cells.

water has not moved at all.

Question 2

Select one answer.

Which substance would be mostlikely to pass through a lipid bilayer/plasma membrane withoutembedded proteins?

water

a steroid hormone

a large fatty acid

a large peptide hormone

a sodium ion

Question 3

Select all that apply.

Which of the following can cross the cell’s plasmamembrane without the assistance of protein transporters?Select all that apply.

large polar molecules

positively charged ions

small hydrophobic molecules

gasses

Question 4

Select one answer.

Biological Membranesare:

symmetrical.

impermeable.

static.

dynamic.

Question 5

Select one answer.

How does the selectivepermeability of the membrane help the cell.

This allows the cell to maintain the proper shape.

This allows the cell to regulate what enters and exits

This allows the cell to maintain a constant temperature.

All of these

Question 6

Select one answer.

What is the role of carbohydratesin the plasma membrane?

cellular identification

adhesion

transport materials across the membrane

help maintain fluidity

Question 7

Select one answer.

Which component of the plasmamembrane has the widest variety of functions?

sterols

carbohydrates

phospholipids

proteins

Question 8

Select one answer.

All of the following have aneffect on the fluidity of a membrane except:

interactions among fatty acids in the core of the bilayer

the cholesterol content

the ratio of saturated to unsaturated fatty acids

the presence of integral proteins in the membrane