BCH 3125 Lecture Notes - Lecture 6: Bind, Microsoft Powerpoint, Hmg-Coa Reductase

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Kd = [p] [l] / [p l] g0. Bind = rt ln(kd: the affinity of a molecular interaction refers to its strength. The greater the decrease in free energy upon binding (i. e. the more negative g0. The specificity of an interaction reflects the affinity of a ligand for one receptor relative to all other possible kinds of receptors. Specificity is defined in terms of ration of dissociation constants. We replace the concentration of protein [p] with r0. In order for binding to be specific two conditions must be met: the dissociation constant for the primary target (r0) must be smaller than the ligand concentration. If we are beyond our kd we are have appreciable binding to our target receptor: the dissociation constant(s) for secondary or off-target receptors (ri) must be larger than the ligand concentration. Now we can define this relationship of being specific using off target receptors ri instead of r0 to be any receptor.

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