BIOL 1001 Lecture Notes - Lecture 1: Scientific Method

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8 Jan 2018

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Darwins second point-natural selection is the cause of evolution. Debating that natural selection may not be the only cause of evolution and why evolution happens. Hypothesis that has been vigorously tested and confirmed. It remains the best explanation of that matter. When we say evolution is occurring, it is because a lot of research and tests have been conducted. We don"t always carry out steps of the scientific method in order. The process is not only rigid, there is also creativity. Things that are accepted today may not be expected tomorrow. Cause of ulcers is excessive stomach acid; most traditional reason. Clamshells was used because it neutralizes acids. Drinking milk was recommended because milk is a base and we know that an acid and a base neutralize a reaction, neutralizing the acid. If no predictions or tests can be made, then the hypothesis is clear and it can either be rejected or accepted.

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Question 1

Evolutionary algorithms are used:

In engineering, to arrive at solutions by going through many permutations of possible solutions and allowing them to evolve.

A genetic feature of complex organisms.

A process undergone by the human brain, which is similar to evolution by natural selection.

Another term used for a computer algorithm in general.

Question 2

Human literature and languages can be studied using methods similar to those used for constructing phylogenies because:

There is no other way of studying these things.

Languages evolve roughly along the lines of species, with mutations (changes in words and pronunciation), descent with modification (languages becoming more different along the way), and branching of languages (languages giving rise to other languages that are similar to them).

Because literature and languages are constructed by organisms (human beings), so what applies to one must apply to the other.

Languages undergo a process of word swapping, which is analogous to horizontal gene transfer.

Question 3

The degree to which horizontal gene transfer occurs in eukaryotes is:

Something upon which the entire validity of evolutionary biology hinges.

A mystery that may or may not disprove evolution, but we simply don't know enough about it at this point.

Something that would overthrow the notion that this phenomenon is important in bacteria.

An interesting and potentially important aspect of biology with relevance for how evolution occurs, but not something that would call it into question one way or the other.

Question 4

Learning about the history of scientific theories and the reasons for why they are initially accepted or rejected is important mostly because:

It makes for exciting story telling, and this is very much needed to get people interested in science.

It teaches us about the process of science as it actually occurs, which is somewhat different to the idealized notion of a purely objective undertaking.

It tells us which theories are definitely true or false.

It tells us that science is actually a totally subjective process that tries to present itself as objective. In reality, personal subjective factors are the only relevant factors that really matter in science.

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In the passages below, Darwin and Wallace both clearly define what a species is based on their observations of the natural world. They then provide explanations for how new species arise.

Excerpt from âThe Origin of Species and Genera (S322: 1880), January 1880 issue of Nineteenth Century,â by Alfred R. Wallace ... A species may be defined as a group of individuals of animals or plants which breed together freely and reproduce their like; whence it follows that all the individuals of a species, now living or which have lived, have descended from a few common ancestors, or perhaps from a single pair. Thus all horses, whether Shetland ponies, racers, or cart-horses, form one species, because they freely breed together, and are known to have all descended from a common stock. By the same test the common ass, the kiang, the quagga, and the zebra, are each shown to be distinct species; for though sometimes two of these species will breed together, they do not do so freely, they do not reproduce their like but an intermediate form called a mule, and these mules are not capable of reproducing their kind, as are the offspring of any pairs of a single species.

Excerpt from âOn the Origin of Species,â by Charles Darwin, 1859 ... So with natural species, if we look to forms very distinct, for instance to the horse and tapir, we have no reason to suppose that links ever existed directly intermediate between them, but between each and an unknown common parent. The common parent will have had in its whole organisation much general resemblance to the tapir and to the horse; but in some points of structure may have differed considerably from both, even perhaps more than they differ from each other. Hence in all such cases, we should be unable to recognise the parent-form of any two or more species, even if we closely compared the structure of the parent with that of its modified descendants, unless at the same time we had a nearly perfect chain of the intermediate links. ...

ï¿¼ï¿¼Excerpt from On the Origin of Species, Chapter 4, by Charles Darwin, 1859 ... On the view that each species has been independently created, I can see no explanation of this great fact in the classification of all organic beings; but, to the best of my judgment, it is explained through inheritance and the complex action of natural selection, entailing extinction and divergence of character, as we have seen illustrated in the diagram. ...

Question: From all these readings, is there evidence that both Darwin and Wallace independently formulated the theory of evolution by natural selection? Support your answer.

In what way did Harlanâs theory give rise to Diamondâs theory?

It recognized agriculture might have developed by different mechanisms in different parts of the world.

Both make the assumption that hunter-gatherers were (and still are) superior to agriculturists.

It recognized the reason agriculture did not develop in certain parts of the world was because people lacked the intelligence or skill.

It is a basic case of scientific plagiarism - Diamonds theory is identical to Harlans theory.

It recognized that agricultural societies were healthier and better fed than hunter-gatherer societies.

What is the difference between classically bred varieties and landraces?

Landraces are not edible by humans; classical bred crops can be eaten

Landraces are grown in dry conditions; classically bred crops are wetland species

Landraces are often (though not always) developed by unintentional processes; classically bred crops are developed by intentionally breeding for desired traits using modern techniques

Landraces cannot be harvested using domesticated animals; classically bred crops can be harvested using domesticated animals.

Landraces have no means of seed dispersal; classically bred crops can readily disperse their seeds

Which of the following types of agriculture can be practiced in an urban setting?

Vertical farms

Community gardens

Alternative farms (crickets, caterpillars, other arthropods)

All of these types of agriculture can be practiced in an urban setting

CSA farms

If a plant can grow well all by itself in the wild, yet still retains desirable agronomic traits, the plant is ____________________.

Plant species that rely on _______ pollination produce much more pollen than those using other methods.

Choose the single best answer

The inability of plants to move makes it difficult for them to:

Disperse seeds, defend themselves, and create oxygen.

Disperse seeds.

Disperse seeds and defend themselves.

Create oxygen.

Defend themselves.

Vavilov hypothesized that in a crop plant's area of origin we should expect:

Greater diversity for trans-domesticated species, but lower diversity for species domesticated in their area of origin.

Greater genetic diversity than in areas outside of the plant's area of origin.

Lower genetic diversity than in areas outside of the plant's area of origin.

Lower diversity for trans-domesticated species, but greater diversity for species domesticated in their area of origin.

Greater herbivore damage because of increased genetic diversity.

What is one type of information that can be gathered by archeologists who are studying dental caries (cavities) of ancient populations?

How many children the person had

The time of year the person died

How many conflicts they have been part of

The types of tools used for planting/harvesting grains

The type of plants they may have been consuming

Brussel sprouts, cabbage, broccoli and cauliflower are all different varieties of the same species, Brassica oleracea. This group of plants demonstrates that crop breeding can lead to:

Low within variety and high between variety diversity

High within variety and low between variety diversity

Low within variety diversity

High within variety and high between variety diversity

High between variety diversity

The repeated domestication of grasses (i.e., cereals) and legumes across the globe is likely because:

Early technologies allowed early agriculturalists the ability to communicate with each other over long distances to discuss what plants were best for domestication.

Both already possessed all of the traits needed for domestication

Both contain almost all of the amino acids our bodies need to build proteins.

Human populations were often starving, and needed an additional food source

Only grasses, not legumes, were repeatedly domesticated

Norman Borlaug won the 1970 Nobel Peace Prize for:

Producing the first transgenic plant.

His discovery that plant secondary metabolites play a role in defending plants from insects and diseases.

Creating the FlavrSavr tomato.

His work to create improved, high yield crop varieties that helped to prevent starvation.

His discovery of the area of origin for maize.

______________________ compounds are produced by plants, but are not necessary for the plant's immediate survival. However, they often help protect plants from being eaten.

Which of the following best demonstrates evolution?

A houseplant is moved to a sunnier location and it starts to grow more vigorously.

Your pet walks to the door when it hears your car in the driveway.

Over time, a gene for disease resistance becomes more frequent in a population of plants.

A crop has a higher yield after fertilizer is added.

A giraffe with a longer neck survives a drought year, while one with a shorter neck does not.

In discussing the origin of agriculture, the term demographic stress refers to:

Lower productivity of un-cultivated plants due to late-Pleistocene cooling.

A higher incidence of religious practice in societies following the transition from hunting and gathering to agriculture.

The situation where human populations are greater than the carrying capacity of the environment.

Hobbes's assertion that hunter-gatherer groups did not posses the knowledge or skills to develop agriculture.

That the stresses on pre-domesticated plant species led to the development of traits that result in the "domestication syndromeâ

What is the difference between genetically-modified and transgenic crops?

Genetically-modified crops are produced using modern techniques, while transgenic crops are produced through classical breeding.

Transgenic crops are a type of genetically-modified crops, in which scientists have inserted genes from another species.

Transgenic crops are illegal, while genetically-modified crops are not.

They are the same.

Genetically-modified crops are a type of transgenic crop specifically bred for high yield.

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BIOL 1001 Lecture Notes - Lecture 1: Scientific Method

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