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13 Dec 2018

Can someone please check and help me with these? Especially II and III?

I. Below is a DNA sequence that is a template strand and contains an Open reading frame for a gene:

3’ TAA ATA CGT GAG GCA CTT CAA AGA CCG CAC ACT_ AAT TT 5’

5’ AUU UAU GCA CUC CGU GAA GUU UCU GGC GUG UGA _ UUA AA 3’

a. Transcribe the DNA template into a strand of mRNA by typing the mRNA sequence below the template strand. Label the 5’ and 3’ end of the mRNA 5’ AUU UAU GCA CUC CGU GAA GUU UCU GGC GUG UGA _ UUA AA 3’

b. Paste the mRNA below and do all 3 reading frames. Highlight all start codons green in all the reading frames. Highlight red the stop codons which are in frame with the start codons in all the 3 reading frames if they are present.

1) 5’ AUU UAU GCA CUC CGU GAA GUU UCU GGC GUG UGA UUA AA 3’

2) 5’ A UUU AUG CAC UCC GUG AAG UUU CUG GCG UGU GAU UAA A 3’

3) 5’ AU UUA UGC ACU CCG UGA AGU UUC UGG CGU GUG AUU AAA 3’

c) In which reading frame is the ORF found? The second one. Since it has AUG.

d) Paste the mRNA showing the most likely ORF below and translate the codons. Label the 5’ and 3’ end of the mRNA and the N- and C-termini of the peptide.

5’ A UUU AUG CAC UCC GUG AAG UUU CUG GCG UGU GAU UAA A 3’

MET HIS SER VAL LYS PHE LEU ARG CYS ASP STOP

N Terminus C Terminus

II. 3 pts. The base calling program made a mistake that you didn’t catch and deleted the bolded G in the original template strand above. Paste the template DNA below and delete the G. Transcribe (show the codons) and translate the resulting sequence. Label the 5’ and 3’ ends of the DNA and mRNA and the N and C-termini of the peptide. Comment on the resulting peptide sequence.

5’ AUUU AUG CAC UCC GUG AAG UUU CUG GCG UGU GAU UAA A ‘3

MET HIS SER VAL LYS PHE LEU ARG CYS ASP STOP

III. 3 pts. The base calling program made a mistake that you didn’t catch and added an extra G after the bolded G in the original template strand above. Paste the template DNA below and insert the extra G. Transcribe (show the codons) and translate the resulting sequence. Label the 5’ and 3’ ends of the DNA and mRNA and the N and C-termini of the peptide. Comment on the resulting peptide sequence.

5’ AUUU AUG CAC UCC GUG AAG UUU CUG GGG UGU GAU UAA A ‘3

MET HIS SER VAL LYS PHE LEU GLY CYS ASP STOP

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Jamar Ferry
Jamar FerryLv2
16 Dec 2018

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