A cytosine is deaminated into uracil. Uracil glycosylase quickly cleaves the uracil residue from the DNA producing an apyrimidinic site. What are the correct order of steps to complete base excision repair?
Question 6 options:
Remove DNA in region with deoxyribosephosphodiesterase.
Cut DNA strand with AP endonuclease.
Seal DNA phosphodiester bond with ligase.
Synthesize new DNA using DNA polymerase using the intact strand as a template.
Cut DNA strand with AP endonuclease.
Synthesize new DNA using DNA polymerase using the intact strand as a template.
Remove DNA in region with deoxyribosephosphodiesterase.
Seal DNA phosphodiester bond with ligase.
Synthesize new DNA using DNA polymerase using the intact strand as a template.
Cut DNA strand with AP endonuclease.
Seal DNA phosphodiester bond with ligase.
Remove DNA in region with deoxyribosephosphodiesterase.
Cut DNA strand with AP endonuclease.
Remove DNA in region with deoxyribosephosphodiesterase.
Synthesize new DNA using DNA polymerase using the intact strand as a template.
Seal DNA phosphodiester bond with ligase.
A cytosine is deaminated into uracil. Uracil glycosylase quickly cleaves the uracil residue from the DNA producing an apyrimidinic site. What are the correct order of steps to complete base excision repair?
Question 6 options:
| Remove DNA in region with deoxyribosephosphodiesterase. Cut DNA strand with AP endonuclease. Seal DNA phosphodiester bond with ligase. Synthesize new DNA using DNA polymerase using the intact strand as a template. | |
| Cut DNA strand with AP endonuclease. Synthesize new DNA using DNA polymerase using the intact strand as a template. Remove DNA in region with deoxyribosephosphodiesterase. Seal DNA phosphodiester bond with ligase. | |
| Synthesize new DNA using DNA polymerase using the intact strand as a template. Cut DNA strand with AP endonuclease. Seal DNA phosphodiester bond with ligase. Remove DNA in region with deoxyribosephosphodiesterase. | |
| Cut DNA strand with AP endonuclease. Remove DNA in region with deoxyribosephosphodiesterase. Synthesize new DNA using DNA polymerase using the intact strand as a template. Seal DNA phosphodiester bond with ligase. |
Related textbook solutions
Related questions
Which of the following did Erwin Chargaff observe?
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The melting temperature (Tm) of a DNA duplex is:
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Given your knowledge and the descriptions of each of thesemethods, which of the following does NOT rely on the ability ofnucleic acids to hybridize with each other?
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Which of the following is a possible reason why DNA uses thymineinstead of uracil?
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Which of the following is an enzyme used in cloning to breakcovalent bonds?
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Which of the following could you use to remove the 5' phosphatesafter cleavage of a plasmid with a single type of restrictionenzyme to ensure that the plasmid would not simply fuse backtogether upon addition of ligase?
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Which of the following would you use to create a cDNA librarythat you would not use for a genomic library?
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A plasmid vector typically has which of the followingfeatures?
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Which of the following is FALSE of genomic or cDNAlibraries?
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Which of the following is NOT a typical component of apolymerase chain reaction (PCR)?
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How can a fusion protein be formed?
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Why is green fluorescent protein (GFP) so useful in visualizingfusion proteins in eukaryotes?
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You wish to determine the cellular location of a protein butunfortunately it is not particularly antigenic (can t develop astrong antibody response). How could you solve this problem?
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A positive result for the yeast two-hybrid analysis means thefollowing:
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Which of the following is the approximate size of the humangenome?
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Which of the following is correct about the structure orlocation of genes?
Question 22 options:
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Multiple answers to each question might be possible!
You decide to identify the CFTR mutation by analyzing the genomic DNA of your patients compared to healthy individuals. You specifically are looking to see whether a specific 3' gene truncation has occurred in the patients. You will determine this using hybridization techniques with samples from healthy and CF patients. Which of the following will allow you to accomplish this?
| Using an RNA probe complementary to the region not removed by the truncation. | |
| Using an RNA probe complementary to the region removed by the truncation. | |
| Using an DNA probe complementary to the region not removed by the truncation. | |
| Using an DNA probe complementary to the region removed by the truncation. |
To conduct the hybridization experiment, you are trying to decide between using a DNA or RNA probe. Which would be ideal to use and why?
| As both are composed of nucleic acids, using either would result in identical results. | |
| An RNA probe because RNA has uracil bases. | |
| An RNA probe because it could also be used in a translation experiment. | |
| A DNA probe because it is more stable than RNA. | |
| A DNA probe because RNA cannot bind to DNA. |
One step of the Hershey/Chase experiment involved blending the virus/cell mixture before centrifugation and probing the pellet for radioactivity. Why was the blending step necessary?
| To collect the bacteria at the bottom of the tube. | |
| To break open the bacteria to release the genome. | |
| To separate the bacteria from the bacteriophages. | |
| To be able to detect the radioactivity. |
Imagine Hershey/Chase had used an RNA virus (genome composed of RNA) instead of a DNA virus in their experiment. Would radioactivity still have been found in the pellet?
| No, because only DNA can be labeled with radioactivity. | |
| No, because the RNA genome would not enter the bacteria upon infection. | |
| No, because while DNA and RNA nucleotides are similar, they are not identical. | |
| Yes, because DNA and RNA nucleotides are similar. | |
| Yes, because genome in any form (DNA, RNA, protein) would be labeled similarly. |
The human genome consists mostly of non-coding DNA. Which of the following are benefits of this?
| Random DNA mutations generally won't affect RNA and protein function. | |
| It is faster to duplicate the genome when these are present. | |
| The existence of introns can lead to multiple variations of proteins encoded by a single gene. | |
| It is unlikely transposons would exist in the genome if there was too much protein coding DNA. |
Explain the 5â to 3â directionality of a DNA stand.
| It is due to the fact that the free 5â carbon is on one end and the free 3â carbon is on the other | |
| It is due to the fact that new nucleotide are added to the 5â carbon of the previous nucleotide | |
| It is due to the fact that there are 3 phosphate groups attached to the 5â carbon | |
| It is due to the fact the complementary strand is 3â to 5â | |
| More than one of the above explain the 5â to 3â directionality |
You accidentally add a mutant dNTP (which has an H instead of an OH connected to the 3â carbon) to a reaction where DNA is being replicated. Which of the following is true of this mutant dNTP?
| It can be incorporated into DNA strand but cannot form a phosphodiester bond with an incoming wild type dNTP | |
| It can be incorporated into a DNA strand but cannot base pair with a complementary nucleotide | |
| It can be incorporated into a DNA strand and can form a phosphodiester bond with an incoming dNTP, but only if it is another mutant dNTP | |
| It cannot be incorporated into a DNA strand. |
Why does DNA polymerase utilize an RNA primer?
| DNA polymerase is unable to initiate strand synthesis but RNA polymerase can | |
| DNA polymerase can only add a dNTP to an rNTP | |
| DNA synthesis proceeds in the 3â to 5â when initiating strand synthesis | |
| Chromosomal DNA contains interspersed RNA fragments | |
| The RNA primer increases stability of the newly synthesized strand |
