1. During DNA replication, proteins unwind the DNA duplex, and separate the DNA strands. Those proteins include:

a.) DNA polymerase and ligase

b.) Single-stranded DNA binding and protein primase

c.) Helicase and DNA polymerase

d.) Helicase and single-stranded DNA binding protein

2. What determines the nucleotide sequence of the newly synthesized strand during DNA replication?

a.) The particular DNA polymerase catalyzing the reaction

b.) The relative amounts of the four nucleotide triphosphates (ATP, GTP, CTP, and TTP) in the cell

c.) The nucleotide sequence of the template strand

d.) The primase used in the reaction

e.) Both A and D

3. The leading and the lagging strands differ in that

a.) The leading strand is synthesized in the same direction as the movement of the replication fork, and the lagging strand is synthesized in the opposite direction.

b.) The leading strand is synthesized by adding nucleotides to the 3â hydroxyl (OH) end of the growing strand, and the lagging strand is synthesized by adding nucleotides to the 5â phosphate (PO4) end.

c.) The leading strand is synthesized continuously, whereas the lagging strand is synthesized in short fragments that are ultimately stitched together.

d.) Both A and B

e.) Both A and C

Match the phrase its definition

DNA replication is semi-conservative

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

DNA replication is bidirectional

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

replication fork

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

leading strand

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

lagging strand

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

DNA is antiparallel

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

DNA is complementary

[ Choose ] place in which the two strands of DNA are being unwound and replicated the side of the DNA double helix that is synthesized continuously replication proceeds from the origin of replication in both directions simultaneously the side of the DNA helix that is synthesized using Okazaki fragments during DNA replication one strand is derived from the original DNA and the other strand is newly synthesized in the paired chains of the DNA helix adenine always binds thymine, and guanine always binds cytosine the two chains in the double helix are oriented in opposite directions

1.When a protein binds to DNA at a site defined by a particular nucleotide sequence, with which parts of the DNA does the protein primarily interact?

A. the phosphate and deoxyribose groups in the DNA backbone

B. the phosphate and deoxyribose groups in the DNA backbone, and hydrophobic interactions with the nucleotide bases

C. nucleotide bases within the major grooves of the DNA

D. nucleotide bases within the major and minor grooves of the DNA

E. none of the above

2. Which of the following proteins binds to DNA with sequence specificity?

A. POI Ill holoenzyme

B. DnaA

C. DnaB

D. Dam methylase

E. Both B and D

3. Which of the following is NOT a functional parallel among all known cellular systems of DNA replication?

A. Replication is initiated at specific sites

B. Replication is continuous on the leading strand and discontinuous on the lagging strand

C. DNA replication is semiconservative

D. Replication forks move away from the origin in one direction

E. Nucleases, polymerases and ligases replace RNA primers with DNA and seal the remaining nick

4. A DNA polymerase cannot synthesize a DNA strand de novo (from the beginning) from a mixture of dNTPs. Which of the following explains the role of the primer in the reaction promoted by this enzyme?

A. The primer is an initiation protein with attached nucleotides that binds to the template and to which new nucleotides are added to the 3 ' end.

B. The primer is an initiation protein with attached nucleotides that binds to the template and to which new nucleotides are added to the 5' end.

C. The primer is a preexisting strand of RNA or DNA to which new nucleotides are added to the 3' end.

D. The primer is a preexisting strand of RNA or DNA to which new nucleotides are added to the 5' end.

E. The primer is a preexisting strand of DNA synthesized by DNA pol I, prior to replicative DNA synthesis by DNA pol Ill.

5. Universal features of DNA polymerases include:

A. 5'-3' exonuclease function.

B. Formation of an 'closed' conformation of the polymerase when the template-nucleotide base pair is correct.

C. Use of a single magnesium ion to orient reacting molecules and assist in dissipation of the negative charge that develops during nucleotidyl transfer.

D. Alignment of conserved residues in the active site for attack of the DNA primer by the 3 'OH on the incoming nucleotide.

E. Continuous unbinding and rebinding of the polymerase to the DNA template as each nucleotide is added.

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