BIOG 1140 Chapter Notes - Chapter 18: Oncogene, Pattern Formation, P53

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lilacmacaw738

28 Sep 2016

School

Cornell University

Department

Biology: General Courses

Course

BIOG 1140

Professor

Robert Turgeon

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Document Summary

Environmental changes trigger changes in transcription (dna rna), thus regulating it. Operator gene, promoter gene, and genes that they control constitute operons. Think about differences in trp operon, lac operon. *final product of tryptophan binds to a repressor, that blocks synthesis of more tryptophan. For lac operon, repressor is already binded to promoter region, meaning that it won"t synthesize key enzymes to break down lactose. Therefore, it is important to note that binding of allolactose separates repressor from promoter region, enabling transcription, and then translation to occur. We call allolactose an inducer for that reason since it induces a change in gene expression. Positive gene regulation also exists for lac operon, as low levels of glucose increase concentration of camp, leading to increased catabolite activator protein (cap). Since increased cap can bind to operon and increase activation of enzymes that break down lactose, we say that cap positively regulates gene expression, since its presence increases gene expression.

Related Questions

A theoretical operon (amo) in E. coli contains several structural genes encoding enzymes involved in the biosynthesis of a particular amino acid. Unlike the lac operon, in which the repressor gene is separate from the operon itself, for the amo operon, the repressor gene is found within the operon itself. When the end product amino acid is present, it binds to the repressor, and this complex binds to the operator, repressing the operon. In the absence of the amino acid, the repressor fails to bind to the operator, and transcription proceeds. Characterize this operon, comparing it to the regulation of the lac and trp operons. Be sure to discuss how regulation is affected by having the repressor gene as part of the operon.

Then, consider the following mutations:

a) Mutation in the operator region;

b) Mutation in the promoter region;

c) Mutation in the repressor gene.

In each case, state whether the operon will be transcribed or not, and describe how the mutation affects the regulation of the operon. Compare each response to the equivalent situation in the lac and trp operons.

1. What is the term when the product of a biochemical pathway inhibits the activity of the first enzyme of a pathway?

		feedback inhibition.
		activator inhibition.
		diffusional regulation.
		enzyme activation.

2. Through control of gene expression, prokaryotes respond to changing __________ conditions.

		internal
		protein
		environmental
		genetic

3. A protein that negatively regulates transcription by binding to the operator is known as the

		operon
		repressor
		activator
		inducer

4. During attenutation, when tryptophan levels are high, the ________ stem-loop forms and transcription ________ the trpL gene.

		1-2, ends just past
		3-4, ends just past
		1-2, continues beyond
		3-4, continues beyond

5. The process of turning on the expression of a gene in response to a substance in the environment is called:

		constituation.
		repression.
		induction.
		catabolism.

6. What is a function of some specific transcription factors?

		to bind to the promoter region of the gene to facilitate the proper alignment of the RNA polymerase
		to bind to the centromere to induce meiosis
		to bind to enhancer regions to help regulate gene transcription
		to bind to the operator to recruit sigma factor

7. How does exposing an E.coli cell to glucose affect the regulation of the lac operon via CAP?

		cAMP binds to CAP and transcription is increased.
		cAMP binds to CAP and transcription is decreased.
		cAMP does not bind to CAP and transcription is increased.
		cAMP does not bind to CAP and transcription is decreased.

8. The lac repressor protein works when mutations in the repressor gene and structural genes are:

		in cis or in trans.
		in trans only.
		in cis only.
		in both prokaryotes and eukaryotes.

scarletwombat949

please answer all the questions answering only one question is not helpful!
Question 1

0 / 1 pts

Which of the following E. coli strains with the lac genotypes will synthesize beta-galactosidase in the presence of lactose?

Note: Superscript wouldn't work in the answers, so for example, lacIs means lacI^s(superrepressor of lacI)

lacIâ lacPâ lacOâ lacZâ lacYâ

lacIs lacP+ lacO+ lacZ+ lacYâ / lacI+ lacP+ lacO+ lacZâ lacY+

lacIs lacPâ lacO+ lacZâ lacY+ / lacI+ lacP+ lacO+ lacZ+ lacY+

lacIâ lacPâ lacO+ lacZ+ lacY+

lacI+ lacP+ lacO+ lacZ+ lacY+

Question 2

0 / 1 pts

Some mutations in the trp 5' UTR region increase termination by the attenuator. An example of a mutation that may have this effect is a

Choose the best answer!

mutation that changes the bases in region 3 of the 5' UTR, such that they no longer pair with region 2 or 4.

deletion of the two tryptophan codons in the 5' UTR leader peptide.

deletion in region 2 in the 5' UTR that prevents it from pairing with region 3.

The second and third answers are correct.

The first, second, and third answers are correct.

IncorrectQuestion 3

0 / 1 pts

Several examples of antisense RNA regulating translation in bacterial cells have been discovered. If you wanted to design a construct to artificially control translation of a bacterial gene with antisense RNA, what type of sequences should the antisense RNA contain?

A sequence complementary to the operator of an operon.

A sequence complementary to a 5' UTR.

A sequence complementary to the Shine-Dalgarno site of the mRNA.

The first and second choices are correct.

The second and third choices are correct.

Question 4

0 / 1 pts

Which of the following correctly describes the function of microRNAs?

Choose the best answer.

MicroRNAs are encoded by genes in the genome of an organism.

MicroRNAs form mRNA which encodes a protein repressor for another gene.

MicroRNAs encode a mRNA that base pairs with itself, forming double stranded RNA.

MicroRNAs are cut into small pieces, then bound by the complex of proteins called RISC to repress the translation of other mRNAs in the cell.

The first and second answers are correct.

The first, third, and fourth answers are correct.

The third and fourth answers are correct.

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BIOG 1140 Chapter Notes - Chapter 18: Oncogene, Pattern Formation, P53

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