BIOL 301 Lecture Notes - Lecture 5: Integrase, Viral Envelope, Ribonuclease H

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samanthajpierce

17 Sep 2018

School

George Mason University

Department

Biology

Course

BIOL 301

Professor

Kocache

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Document Summary

Biology and replication: a virus has attachment sites on its surface gp160 = gp120 + gp41. Hiv attaches to helper t-cells and microphages: for hiv: cd4 receptor and coreceptor. Cd4 can be combined with either r4 or r5: the receptors are virus-specified and possess physiological functions. Cd4 molecules on t-helper cells have immune function: also serve as the receptor for hiv-1. Virus attachment sites must be on the periphery of a virion: can be blocked by specific neutralizing antibodies; antibodies specifically made against the receptors on the surface of a pathogen, after attachment is penetration. The nucleocapsid enters the cell by: fusion of the cell membrane with viral envelope, pinocytosis. Fusion is usually mediated by viral envelope proteins: after penetration is uncoating. Involves the disassembly of nucleocapsid into capsid proteins and viral nucleic acid. The disassembly is achieved by unidentified host enzymes. The host enzymes partially expose the viral genome and viral-specific enzymes complete the process: nucleic acid replication.

Related Questions

Question 1 10 pts

What three kinds of cells are infected by HIV?

macrophages, T-Helper cells and dendritic cells

B-cells, skin cells and T-helper cells

B-cells, T-Helper cells and T-killer cells

macrophages, dendritic cells and cytotoxic T-cells

Question 2 10 pts

Sometimes an HIV infected cell is not killed immediately after infection, but lives on, and continues to be a source of the infection for the lifetime of the patient. What is the mechanism that allows the HIV virus to remain in the cell, to get passed down to all descendants of that cell, and to retain the ability to be reactivated for the lifetime of the patient?

Question 3 10 pts

List the three processes that viruses are dependent on their host cells for.

Question 4 10 pts

What does the ELISA test for HIV infection measure?

HIV-specific antibodies

Hepatitis B-specific antibodies

circulating HIV particles

HIV-specific DNA

Question 5 10 pts

What is the cell surface receptor for HIV?

CD4

CD8

MHCII

HIV

Question 6 10 pts

What is the likely origin of HIV-1?

infection of humans by a simian virus native to the chimpanzee

germ warfare research by the CIA

sexually transmitted to humans through relations with sheep

a new human-chimpanzee hybrid virus accidentally made in a laboratory with recombinant DNA

Question 7 10 pts

How does AZT block the production of infectious virus?

It acts as a substitute for a DNA nucleotide that can only be inserted by the viral reverse transcriptase. The presence of the AZT in the DNA aborts the production of new viral DNA.

It directly blocks the reverse transcriptase.

It blocks the protease that cuts apart the three viral proteins, which is a necessary step during viral synthesis.

It blocks the adsorption of the virus to the CXCR4 and CCR5 receptors on the T-cell surface.

Question 8 10 pts

How do protease inhibitors work?

It blocks the protease that cuts apart the three viral proteins, which is a necessary step during viral synthesis.

It directly blocks the reverse transcriptase.

It acts as a substitute for a DNA nucleotide that can only be inserted by the viral reverse transcriptase. The presence of the AZT in the DNA aborts the production of new viral DNA.

It blocks the adsorption of the virus to the CXCR4 and CCR5 receptors on the T-cell surface.

Question 9 10 pts

What are the 2 most common causes of a false negative result in the HIV test?

Questions 10-13

The next set of 4 questions deal with the possible ways that a virus, not necessarily the HIV, can enter the body. Answer TRUE or FALSE to each question.

Question 10 2.5 pts

Some viruses can enter the body through breaks in the skin.

True

False

Question 11 2.5 pts

Some viruses can enter the body through the anal/genital tract.

True

False

Question 12 2.5 pts

Some viruses can enter the body through the oral cavity and the digestive tract.

True

False

Question 13 2.5 pts

Some viruses can enter the body through inhalation via the respiratory tract.

True

False

1. Neutralizing antibodies are effective at preventing
infection or toxicity mediated by pathogens or their toxic products. In fact, nearly all vaccines currently in use function by eliciting neutralizing antibodies. The most important feature of a neutralizing antibody is:
A. Having a high degree of multi-valency, such as being a pentamer or hexamer of immunoglobulin monomers
B. Having high affinity for the antigen
C. Being present at a high concentration in the circulation
D. Being efficient at activating the complement cascade
E. Having a long half-life in the body

2. IgM antibodies are much more efficient than IgG at activating the complement cascade. However, under certain circumstances, IgG antibodies will activate the complement pathway. One example of a situation in which IgG binding to its antigen will
NOT trigger the complement cascade is when:
A. The IgG antibodies bind to a multivalent soluble antigen in solution, such as a polysaccharide structure shed from a bacterial pathogen.
B. The IgG antibodies bind to a viral capsid protein that is present in more than 100 copies on the viral particle surface.
C. The IgG antibodies bind to a bacterial surface by recognizing a repetitive polysaccharide component of the bacterial capsule.
D. The IgG antibodies are binding self-antigens such as chromatin released from dead cells.
E. The IgG antibodies are neutralizing a bacterial toxin protein by blocking the receptor-attachment site on the toxin.

3. Antibody-dependent cell-mediated cytotoxicity (ADCC) is an important effector mechanism in immunity to virus infections. This immune pathway has also been exploited for clinical applications. For instance, patients with
various disorders, including rheumatoid arthritis and some B cell lymphomas, are treated with an antibody directed at CD20, a surface receptor expressed on all B cells. This antibody leads to the depletion of B cells from the patients by the actions of:
A. Natural killer (NK) cells
B. Cytotoxic CD8 T cells
C. Cytotoxic CD4 T cells
D. Activated macrophages
E. The complement cascade membrane attack complex

copperwhale140

1. A mutation in the gene encoding the integrase enzyme rendersthe protein non-functional. How would the affect the HIV infectioncycle?

Formation of the provirus would bestopped.

Reverse transcription would nolonger be possible.

The gp120 glycoprotein would nolonger be able to bind to the CCR5 receptor.

Cutting and assembling the capsid would be halted.

2. If the viral gene is AUGCCCAGG and the mRNA used to make theviral protein is UACGGGUCC, then the virus is a :

Negative strand RNA virus

Double stranded DNA virus

Retrovirus

Positive strand RNA virus

3. Would treating prions with enzymes that digest nucleotides bean effective neutralization method?

No, prions lack amino acids.

Yes, prion nucleic acids would besusceptible to enzymatic digestion.

No, prions lack phosphodiesterbonds and would not be subject to digestion by these types ofenzymes.

Yes, the bonds between the amino acids would be hydrolyzed.

4. Most Americans born before 1970 have a permanent scar ontheir shoulders from the smallpox vaccine. Why don't youngerAmericans have one?

Smallpox has been eradicated by aworldwide vaccination program.

Smallpox is no longer lethal.

A safer less damaging vaccine wasdeveloped in the early 1970's.

The vaccine is no longer effective due to antigenic shift.

5. What kind of pathogen would retain its ability to causeinfections after being treated with powerful proteolytic chemicalsthat would destroy all proteinaceous material?

A viroid

6. Select all of the false statements concerning AIDS.

AIDS kills the patient.

Patients die as a result ofopportunistic infections.

AIDS shuts down the immunesystem.

HIV therapy (HAART) can clear thevirus from the bloodstream.

HIV therapy (HAART) can clear the virus from the patient'sbody.

7. Why do viruses only infect specific types of cells?

Viruses only attack epithelialcells, such as the cells lining the lungs.

If a host cell is weakened, viruseshave an easier time infecting it.

The initial choice is random butonce a cell type is chosen it becomes the preferred host.

The host cells have the correctsurface receptor that the virus can fit into.

Viruses infect the first cells they encounter.

8. Nucleotide analogs are a class of drugs that are highlyeffective against many types of viruses. They work by halting thereplication of viral genes. They are equally effective at stoppingthe spread of prion diseases.

True

False

9. An experimental chemical has been shown to selectively cleavephosphodiester bonds. How would the affect a virus?

Dissociate the envelope

Fragment the genome

Hydrolyze the protein coating

Alter the host binding site

Digest the capsid

10. HIV uses cell surface receptors to enter host cells. Whydoes switching from a CCR5 co-receptor to a CXCR4 co-receptoreventually shut down the immune system?

	Macrophages have CCR5co-receptors.
	T-helper cells have CXCR4co-receptors.
	T-helper cells are not involved incoordinating immune responses.
	Only macrophages are killed byHIV.

crimsonsalmon160

BIOL 301 Lecture Notes - Lecture 5: Integrase, Viral Envelope, Ribonuclease H

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