An individual inherits two defective copies of the MLH1 gene, a protein involved in mismatch repair of DNA during its replication. What do you predict will be the consequences of deficient mismatch repair upon DNA replication?
a. The fidelity of DNA polymerase activity will be decreased.
b. Mismatched nucleotides will no longer be detected by the replication complex.
c. Ligase will not be able to repair nicks in the DNA.
d. There will be a higher frequency of nucleotides damaged by external agents.
e. A higher frequency of mutations will become fixed in the newly synthesized strand.
An individual inherits two defective copies of the MLH1 gene, a protein involved in mismatch repair of DNA during its replication. What do you predict will be the consequences of deficient mismatch repair upon DNA replication?
a. The fidelity of DNA polymerase activity will be decreased.
b. Mismatched nucleotides will no longer be detected by the replication complex.
c. Ligase will not be able to repair nicks in the DNA.
d. There will be a higher frequency of nucleotides damaged by external agents.
e. A higher frequency of mutations will become fixed in the newly synthesized strand.
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Why does a template-dependent DNA polymerase require a primer to initiate DNA synthesis?
DNA polymerase require 5' phosphate to add a new nucleotide | |
DNA polymerase require 3' hydroxyl group to add a new nucleotide |
DNA polymerase require energy by hydrolizing the primers |
Which of the following enzymes is template independent?
Reverse transcriptase | |
Klenow fragment |
DNA polymerase | |
Terminal deoxynucleotidyl transferase |
RNA polymerase |
The natural function of a DNA ligase enzyme is:
Joining together DNA sequences with compatible cohesive ends from two different organisms to yield a recombinant DNA molecule | |
Sealing single stranded nicks in double stranded DNA molecules |
Joining together two blunt ended fragments of DNA within a cell | |
Joining together two single stranded DNA molecules |
The natural function of 3' -> 5' exonuclease activity of a DNA polymerase is to:
Remove the 5' end of the DNA strand that is being copied | |
Remove damaged nucleotide from the template strand |
Remove nucleotides from the end of DNA to generate blunt ends | |
Remove incorrect nucleotides from the newly synthesized DNA |
Which technique is used to resolve the different sizes of DNA fragments?
Gene cloning | |
PCR |
DNA sequencing | |
Gel electrophoresis |
Which of the following vectors does not contain bacterial origin of replication (oriC)?
plasmid | |
cosmid |
bacterial artificial chromosome | |
lambda vector |
Which process of bacteriophage is not used for gene cloning?
Concatemer formation | |
Lytic cycle |
Lysogenic cycle | |
viral packaging |
What vector would be best suited for creating a contig of bovine (cattle) chromosome 10?
lambda vector | |
Cosmid vector |
P1 vector | |
Plasmid |
E. coli takes up plasmid DNA by which of the following methods?
Transduction | |
Transformation |
Conjugation | |
Transfection |
The following times and temperatures are an example of the steps for PCR. You can use the Figure to help you answer the following questions.
Why is the first step is carried out at 94°C?
To degrade the template | |
To denature the template |
To activate the polymerase | |
To facilitate the primer binding |
What happens in the reaction when the temperature shifts to 55°C during cycling?
the DNA polymerase will carry out DNA synthesis by extending the annealed primers | |
the DNA polymerase will finish DNA synthesis |
the primers anneal to the single-stranded regions of the DNA | |
the primers anneal to the double-stranded regions of the DNA |
During cycling, what occurs when the temperature is at 72°C?
the primers anneal to the double-stranded regions of the DNA | |
the DNA polymerase will carry out DNA synthesis by extending the annealed primers |
the primers anneal to the single-stranded regions of the DNA | |
the DNA polymerase will finish DNA synthesis |
You designed a set of primers to amplify 1 kb DNA with polymerase chain reaction. By which cycle of polymerase chain reaction, we would expect to see the first double stranded DNA with expected size?
The end of cycle 1 | |
The end of cycle 2 |
The end of cycle3 | |
The end of cycle 4 |
QUESTION 1
A mutation caused by exposure to gamma rays is called a spontaneous mutation
a. | True | |
b. | False | |
c. | Sometimes, depending on the type of base change | |
d. | Gamma rays do not cause mutations |
QUESTION 2
A recessive mutation affecting an essential biochemical pathway can be detected________
a. | when the organism is heterozygous for that mutation. | |
b. | when the organism is homozygous for that mutation. | |
c. | in either homozygous or heterozygous conditions. | |
d. | only by sequencing (recessive mutations never show a phenotype). |
QUESTION 3
During DNA replication, the newly synthesized chain grows by adding
a. | nitrogenous bases | |
b. | the sugar-phosphate backbone | |
c. | nucleosides | |
d. | dNTPs |
QUESTION 4
During replication, the DNA strand 5â- AAGTCTAGCCTAG -3â will serve as a template for the polymerization of:
a. | 5â- CTAGGCTAGACTT -3â | |
b. | 5â - TTCAGATCGGATC -3â | |
c. | 5â - GATCCGATCTGAA -3â | |
d. | 3â - AAGTCTAGCCTAG -5â |
QUESTIOn 5
Given the following DNA sequences, select which statement(s) is(are) correct.
Sequence 1:
5â-TGGACGCTAA-3â
3â-ACCTGCGATT-5â
Sequence 2:
5â-AATCGCAGGT-3â
3â-TTAGCGTCCA-5â
Sequence 3:
5â-ACCTGCGATT-3â
3â-TGGACGCTAA-5â
a. | Sequences 1 and 2 are the same | |
b. | Sequences 1 and 3 are the same | |
c. | Sequences 2 and 3 are the same | |
d. | Sequences 1, 2 and 3 are all different |
QUESTION 6
Repetitive sequences in the genome are hotspots for:
a. | Deamination | |
b. | Depurination | |
c. | Thymine dimer formation | |
d. | Replication errors |
QUESTION 7
Select which statement(s) about the Ames test is(are) correct
a. | it has been designed to understand mutation repair systems in Salmonella typhimurium | |
b. | it uses mammalian liver extract | |
c. | it allows to study whether chemical compounds or their enzymatic breakdown products are mutagenic | |
d. | it is based on whether a chemical compound causes reversion mutations from his+ to his- | |
e. | two of the above are correct | |
f. | three of the above are correct |
QUESTION 8
Select which statement(s) is(are) correct.
a. | All DNA strands have a direction, and it is specified by the carbons in the sugar backbone. | |
b. | All DNA strands have a direction, and it is specified by hydrogen bonds between nucleotides. | |
c. | In order to form proper base pairs in a double stranded DNA molecule, the two strands must run in opposite directions. | |
d. | A and C are correct. | |
e. | B and C are correct. |
QUESTION 9
Studies of gene mutation frequencies have shown that:
a. | mutations are rare, and genomes are generally stable. | |
b. | mutation frequencies differ among organisms and also between genes, suggesting certain genes are more susceptible to mutation. | |
c. | mutation frequencies are consistent between organisms, and each region of DNA is equally susceptible to random mutations. | |
d. | Both A and B are correct. | |
e. | Both A and C are correct. |
QUESTION 10
The compound 5-bromodeoxyuridine (BrdU) is a derivative of uracil, and if BrdU becomes incorporated during DNA replication, it pairs with adenine. This compound is best classified as which type of mutagen?
a. | base analog | |
b. | base inducer | |
c. | intercalating agent | |
d. | oxidative agent | |
e. | alkylating agent |
QUESTION 11
The rate of mutation of the fruit fly is higher than the rate of mutation of Algae
True
False
QUESTION 12
Thymine dimers are most commonly caused by which of the following?
a. | X-rays | |
b. | Alkylating agents | |
c. | U.V. irradiation | |
d. | DNA intercalating agents |
QUESTION 13
What chemical group is found in the 3â end of a DNA strand?
a. | an alcohol | |
b. | a hydroxyl | |
c. | a methyl | |
d. | a phosphate |
QUESTION 14
What chemical group is found in the 5â end of a DNA strand?
a. | an alcohol | |
b. | a hydroxyl | |
c. | a methyl | |
d. | a phosphate |
QUESTION 15
Which is the correct order of molecules binding to DNA during DNA replication?
a. | Helicase, SSB, primase, DNA pol III, DNA pol I, ligase | |
b. | SSB, DNA pol I, ligase, helicase, DNA pol I, primase | |
c. | primase, helicase, DNA pol III, ligase, DNA pol I, SSB | |
d. | SSB, helicase, primase, DNA pol III, DNA pol I, ligase |
QUESTION 16
Which statement(s) is(are) correct about strand slippage?
a. | It can cause disorders such as Huntingon disease. | |
b. | It is a process that causes mutations altering the number of DNA repeats. | |
c. | It is a process that incorporates nucleotide base analogs and trinucleotide repeats. | |
d. | a and b are correct. | |
e. | b and c are correct. | |
f. | a, b and c are correct. |
help needed asap.