BIOB50H3 Lecture Notes - Lecture 10: Rhodopsin, Glycosylphosphatidylinositol, Cytosol

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carminebear550

6 Mar 2016

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Lecture 10 synth of secreted proteins, membrane proteins, lipid-anchored proteins, glycol, membrane lipids. Proteins are sorted to the er by transmembrane transport, just like they are mitochondria, chloro, and peroxisome. They can be further sorted by vesicular transport to other compartments or cell surface. Have er signal sequence at n-terminal generally. Include: soluble proteins, transmembrane proteins, or those destined. Hydrophobic amino acids at n-terminus, the first thing synthesized by for golgi, secretion, lysos mrna + ribosomes. Er signal sequence emerges first the ribosome. The ribosome is then directed to the er membrane, for a co-translational process. Protein is sorted during translation is the definition of that and the protein is unfolded during the translation process. Signal recognition particle (srp) and srp receptor have gtpase domains (they bind gtp) Ribosome ---> protein translocator channel (translocon), a gated channel. Ribosome forms a tight seal with the translocator. This prevents the diffusion of ions, small molecules.

Related Questions

Imagine that you have engineered a set of genes , each encoding a protein with a pair of conflicting signal sequences that specificy different compartments. If the genes were expressed in a cell, what signal would win and why?

1) A) Signals for import into ER would beat signals for import int the nucleus. What is the reasonable explanation?

1) The nuclear transport receptor is more efficient than the signal recognition particle (SRP)

2) The ER signal near the N-terminus will be exposed before the nuclear signal during protein synthesis and thus recognized by SRP before the nuclear signal is even available

3) the nuclear signal near the middle of the sequence will be exposed before the ER signal during protein synthesis and thus recognized by the nuclear transprot protein before the ER signal is active.

4) the SRP is more efficient than the nuclear transport receptor.

B) Signals for import into ER would beat signals for import into peroxisomes. What is the reasonable explanation?

1) The peroxisome transport proteins are more efficient than the signal recognition particle (SRP)

2) The ER signal near the N-terminus will be exposed before the peroxisome signal during protein synthesis and thus recognized by SRP before the peroxisome signal is even available

3) peroxisome proteins are transported by vesicles not by transport proteins.

4) the SRP is more efficient than the peroxisome transporter.

C) Signals into the mitochondria and retention into the ER? Which would win? Reasonable explanation as to why?

1)Mitochondria

2)ER

and

1) The mitochondrial transport protein is more efficient than the signal recognition particle (SRP)

2) The ER signal near the N-terminus will be exposed before the mitochondrial signal during protein synthesis and thus recognized by SRP before the mitochondrial signal is even available

3) the mitochondrial signal near the N-terminus of the sequence will be exposed before the ER retention during protein synthesis and thus recognized by the SRP before the ER signal is active

4) the signal for retention of a protein in the ER is at the C-terminus and not recognized until import into the ER begins

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please help me answer theses questions correctly

1/ Which of the following are required for one-pass transmembrane proteins?

I. N-terminal signal sequence

II. Binding of SRP to the SRP receptor

III. Presence of stop-transfer sequence

IV. Presence of start-transfer sequence

a) I and III

b) I, II, and III

c) II, III, and IV

d) I, II, III, and IV

___________________

2/ Which of the following statements about the signal-recognition particle (SRP) is FALSE?

a) The SRP binds to the ER signaling sequence after the entire protein has been translated by the ribosome.

b) The SRP cycles between the ER membrane and the cytosol.

c) The SRP is required for peptides destined for either the ER membrane or ER lumen.

d) The SRP recognizes the signal sequence at the N-terminus of the newly forming polypeptide.

______________________

3) t-SNARES are _____.

a) found on the cytosolic side of the vesicle membrane.

b) necessary for recognition and transport of proteins into the nucleus.

c) usually located on the target membrane.

d) necessary for vesicle formation.

ceruleanchimpanzee878

1) how does the timing and location of Arf1-GTP hydrolysis contribute the transport of COPI coated vesicles?

2) Consider cargo proteins that are destined for secretion to the extracellular space. For each of the following pairs of mutations or conditions, predict where the cargo will end up (ex. in the cytoplasm, a specific organelle, transport vesicles, multiple places, extracellular space) for: (i) & (ii) Each individual condition; & (iii) The combination of both.

A.(i) Normal Sar1 is mutated so that it hydrolyzes GTP immediately after binding GTP.

(ii)The signal recognition particle is mutated to be unable to bind to the SRP receptor.

(iii)Both

B.(i) A mitochondrial signal sequence is added to the C-terminus of the cargo protein.

(ii)v-SNAREs on COPII coated vesicles are mutated to be unable to bind t-SNAREs

(iii)Both

C. (i) COPII coat proteins are mutated so they donât bind to the ER membrane.

(ii)COPI coat proteins are mutated so they donât bind to the Golgi membrane.

(iii)Both

D.(i) Normal Sar1 is mutated so it binds tightly to GDP and cannot exchange it for GTP. (This leads to Sar1*-GDP being the only form of the protein in the cell.)

(ii) A transmembrane domain is added to the cargo protein.

(iii)Both

BIOB50H3 Lecture Notes - Lecture 10: Rhodopsin, Glycosylphosphatidylinositol, Cytosol

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