Biology 1002B Chapter Notes - Chapter 6: Citric Acid Cycle, Cellular Respiration, Oxidative Phosphorylation

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amethystarmadillo903

3 May 2018

School

Western University

Department

Biology

Course

Biology 1002B

Professor

Tom Haffie Denis Maxwell

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Cellular respiration: the process by which energy-rich molecules are broken down to produce

ATP

6.1a Food is Fuel

• Good fuel molecules have an abundance of C-H bonds

o E- that is farther away from nucleus contain more energy than e- closer to nucleus

o E- in C-H bond are not strongly held by C or H, which means e- can be easily

removed to do work

o CO2 contain less potential energy because O is electronegative and hold e- closer to

nucleus, thus harder to remove e-

• Fats contain more energy per unit of weight than proteins and carbohydrates because it is

almost entirely C-H bonded

6.1b Coupled Oxidation-Reduction Reactions are Central to Energy Metabolism

• Potential energy released when molecules are oxidized (lose e-)

• E- released from oxidized molecule is used to reduce another molecule (gain e-)

• Many oxidation reactions involve O2, but others do not

• Gain or loss of e- is not always complete

o What changes is degree to which e- are shared between two atoms

o CH4 + 2O2 ---> CO2 + 2H2O + energy

o In the reactant, e- in methane is shared equally in C-H bond

o In the product, e- in CO2 is more closer to O, so C has partially lost its e-, and

methane is oxidized

o In the reactant, e- in O2 is shared equally in O=O bond

o In the product, e- in H2O is closer to O, so O has partially gained e-, and O2 is

reduced

o Energy is released as e- in C-H move closer to O that form CO2

6.1c Cellular Respiration is Controlled Combustion

• Energy of C-H bonds not liberated suddenly to produce heat; energy is transferred to

carrier molecules

• Dehydrogenase: enzyme that oxidizes food and transfers e- to energy carrier

o Dehydrogenase removes 2H from substrate, and transfers 2 e- and one H+ to NAD+

o NAD+ (electron carrier) is reduced to NADH

o Efficiency of enzyme-catalyzed transfer of energy from food to NAD+ is very high

Goal of cellular respiration - transform potential energy in food into ATP

6.2a Cellular Respiration Can be Divided into Three Phases

1. Glycolysis

o Enzymes break down one glucose into two pyruvates

o Some ATP and NADH is synthesized

2. Pyruvate oxidation and citric acid cycle

o Acetyl-CoA is formed from oxidation of pyruvate and is completely oxidized to CO2

o Some ATP and NADH is synthesized

3. Oxidative phosphorylation

o NADH synthesized in glycolysis and citric acid cycle is oxidized

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Document Summary

Cellular respiration: the process by which energy-rich molecules are broken down to produce. Fats contain more energy per unit of weight than proteins and carbohydrates because it is almost entirely c-h bonded. In the reactant, e- in methane is shared equally in c-h bond. In the product, e- in co2 is more closer to o, so c has partially lost its e-, and methane is oxidized. In the reactant, e- in o2 is shared equally in o=o bond. In the product, e- in h2o is closer to o, so o has partially gained e-, and o2 is reduced: energy is released as e- in c-h move closer to o that form co2. Goal of cellular respiration - transform potential energy in food into atp. 6. 2b the mitochondrion is the site of cellular respiration in eukaryotes. In bacteria and archaea, glycolysis and citric acid cycle occur in cytosol; oxidative phosphorylation occurs on internal membranes.

Related Questions

_____What is added to a molecule such as ADP when it is phosphorylated?

_____ An anaerobic process in which pyruvate is converted to lactate

_____ A biochemical process that breaks down food molecules to produce other molecules for cellular maintenance.

_____What is the final end product of Glycolysis?

_____ Refers to the potential energy provided by a large hydrogen-cation concentration gradient, and itâs movement across a biological membrane during chemiosmosis.

_____ A molecule that transfers or shuttles electrons during redox reactions.

_____ An organism that can survive in the presence or absence of oxygen.

_____ A type of enzyme that teams with NAD⁺ to remove hydrogen atoms with their electrons.

_____ The loss of electrons from one molecule to another.

_____ A process in which ATP is produced using the energy stored in concentration gradients.

_____ The products produced during a biochemical reaction that fall between the starting molecule and the end product.

_____ Biochemical process in which a glucose molecule is degraded to two pyruvates.

_____ Short for âreduction/oxidationâ reactions

_____How many pyruvate molecules are produced from a single Glyceraldehyde 3-phosphate?

_____ The formation of ATP occurring when an enzyme transfers a phosphate group from an organic molecule to ADP.

_____ Organisms that will die in the presence of oxygen.

_____ A term referring to the presence of oxygen.

_____ A series of electron-carrier molecules that shuttle electrons during the redox reactions that release energy used to make ATP.

_____ A biochemical process in which pyruvate is produced without the presence of oxygen.

20._____ The metabolic cycle that is fueled by Acetyl CoEnzyme A; occurs in the matrix of the mitochondria and supplies most of the NADH molecules that carry energy to the electron transport chain.

_____What is the chemical formula for Cellular Respiration?

_____What environmental condition is necessary for Anaerobic Respiration to occur?

_____Where does the Electron Transport Chain occur in the mitochondria?

_____Where does Glycolysis occur in a cell?

_____ An anaerobic process in which CO₂ is released as a byproduct and ethanol is produced as a product.

_____Where does the Krebs cycle occur in the mitochondria?

_____ The gain of electrons from one molecule to another.

_____ A high-energy fuel molecule that begins the Citric Acid Cycle.

_____What condition is necessary of Aerobic Respiration to occur?

_____ A term referring to the absence of oxygen.

_____What compound is derived from B vitamins, and helps the Acetyl portion of Acetyl CoA into the Krebs Cycle?

_____What is the name of the molecule that channels protons, providing the energy necessary to phosphorylate ADP to ATP?

_____In the blank, write the number of ATP^âs that can be synthesized from 3 NADH molecules.

_____In the blank, write the number of ATP^âs that can be synthesized from a single FADH₂ molecule.

_____What is the final electron acceptor in cellular respiration?

_____What molecule is regenerated during the process of the Krebs Cycle?

_____What enzyme is used to catalyzed the reaction that occurs during the formation of Acetyl CoA?

_____How many pyruvates are produced from a single glucose molecule?

_____How many Acetyl CoA molecules are produced from a single glucose molecule?

_____What is the reduced form of Nicotinamide Adenine Dinucleotide?

_____What is the oxidized form of Flavin Adenine Dinucleotide?

42._____ A membrane protein that is used in conjunction with chemiosmosis to produced ATP.

I know that this alot of questions, but it's kinda a last ditch effort. these are the last 42 definitions i have left to answer out of 500 question for my final exam study guide. so whatever help i can get is fine. No explanations needed just what each definition is explaining and thanks in advance ladies and gentlemen.

scarletlocust623

Review question its 1-12 sorry for the xtra questions in the bottom

1:2D chromatography is so named because ____

A: there are two steps: labeling with a radioactive marker and separation via chromatography

B: two different solutions are used in the paper chromatography

C: the molecules are separated into a linear arrangement, meaning two dimension

D: two different types of radioactive markers must be used

E: the process separates the molecules in two direction, first along the X and then along the Y axis

2: :Which molecule(s) regulate(s) photosynthesis by sensing the metabolic status of the chloroplast and regulating proton flow out of the thylakoid lumen??

A: ATP synthase

B: antenna complex

C: Chrolophyll B

D: carotenoids

E: chlorphyll A

3: When does A CAM plant take in atmospheric CO2?

A: daytime only

B: Summer day

C: winter day

D: nighttime only

E: anytime the calvin cycle is happening

4: Where can you find ATP synthase in a plant cell ?
A; in the thylakoid membrane only

B: in the mitochondial inner membrane

C: both thylakid and inner mitochondria membrane

D: only in the nucleus

E: embedded in the plasma membrane

5: chloroplast kept in the daek can continue to make sugar is provided with

A: NADPH, CO2, and ADP

B: CO2, and ATP

C: NADPH, ATP, and CO2

D: NADPH and ATP

E: water and ATP

7: C3 plants are more susceptible to photorespiration than either C4 or CAM plants. Why do most plants lack the C4 pathway??

A: Switching between C3, C4, and CAM photosynthesis is very difficult for most plants

B: ?Rubisco is more efficient in C3 plants when compared to rubisco of C4 and CAM plants

C: Most plant species do not have vacuoles in their cells to store the malate generated from CO2 taken in during the night.

D; : Photorespiration is not a serious problem for most plants.?

E: There is an energetic cost to C4 and CAM pathways that only makes them advantageous in very hot and/or arid environments.?

8: In Engelmann's classic experiment, why were the oxygen-requiring bacteria clustered around the regions of Spirogyra algae that were bathed in red, blue, and violet light?

A; The bacteria were immobile and that is where Engelmann happened to place them

B; The most energy-rich wavelengths of light are found at the edges of visible and nonvisible light (ultra

violet and infrared)

C; Photosynthesis is most active in those wavelengths of light and thus more oxygen is consumed by the algae in those regions.

D: Photosynthesis is most active in those wavelengths of light and thus more oxygen is produced by the algae in those regions.?

E: : Chlorophyll is green and thus reflects green light.

9: In any experiment, changes to the dependent variable based on the manipulations of the independent variable are measured. When determining the action spectrum of a given plant, what is the independent variable and what is the dependent variable?

A: independent = rate of O2 release in photosynthesis; dependent = wavelength?

B: ?independent = absorption of light; dependent = wavelength

C: independent = wavelength; dependent = rate of O2 release in photosynthesis?

D: independent = wavelength; dependent = absorption of light?

E: independent = rate of O2 release in photosynthesis; dependent = absorption of light

10: Which plant structure is responsible for gas exchange??

A: stromal lamellae

B: grana

C: granastomata?

D: stroma

11: n order to elucidate the Calvin cycle, Calvin and his colleagues used two-dimensional paper chromatography to analyze the presence of different molecules under different conditions. What did they conclude from the accumulation of RuBP when CO2 levels were low??

A: CO2 serves as a non-competitive inhibitor of rubisco.

B: RuBP is the last substrate to react in the Calvin cycle.

C: RuBP only reacts with CO2 when concentrations of ATP are low

D: RuBP is the first substrate to react with CO2

E: ?RuBP only reacts with CO2 in the sunlight.

12: Why isn't oxygen produced by organisms that perform anoxygenic photosynthesis?

A; their membranes lack ATP synthase?

B; They use a different enzyme for the initial reactions of the calvin cycle

C: they use electrons donors other than water

D: their photosystem do not utilize the calvin cycle

E: their chorophyll contains an iron rather than magnesium

A: ?there are two steps: labeling with a radioactive marker and separation via chromatography

B: two different solutions are used in the paper chromatography process?

C: the molecules are separated into a linear arrangement, meaning two dimensions?

D: two different types of radioactive markers must be used?

E: the process separates the molecules in two directions, first along the x axis and then along the y axis?

2:Which molecule(s) regulate(s) photosynthesis by sensing the metabolic status of the chloroplast and regulating proton flow out of the thylakoid lumen??

A: ?ATP synthase

B: the antenna complex?

C: chlorophyll b?

D: carotenoids?

E: chlorophyll a

3: When does a CAM plant take in atmospheric CO2??

A: ?daytime only

B: summer only?

C: ?winter only

D: nighttime only?

?e: anytime the Calvin cycle is occurring

4: Where can you find ATP synthase in a plant cell??

A: ?in the thylakoid membrane only

B: in the mitochondrial inner membrane only?

C: both the thylakoid and inner mitochondrial membranes?

D: only in the nucleus?

E: ?embedded in the plasma membrane

5: Chloroplasts kept in the dark can continue to make sugar if provided with ____.

A: NADPH, CO2, and ADP?

B: CO2 and ATP?

?c: NADPH, ATP, and CO2

D: NADPH and ATP?

E: water and ATP

6: Where does the Calvin cycle occur?

A: thylakoid lumen?

B: cytosol?

C: stroma?

D: stromal lamellae

?e: thylakoid membrane

7: C3 plants are more susceptible to photorespiration than either C4 or CAM plants. Why do most plants lack the C4 pathway??

A: Switching between C3, C4, and CAM photosynthesis is very difficult for most plants.?

B: ?Rubisco is more efficient in C3 plants when compared to rubisco of C4 and CAM plants.

C: Most plant species do not have vacuoles in their cells to store the malate generated from CO2 taken in during the night.?

D: Photorespiration is not a serious problem for most plants.?

E: There is an energetic cost to C4 and CAM pathways that only makes them advantageous in very hot and/or arid environments.?

8: In Engelmann's classic experiment, why were the oxygen-requiring bacteria clustered around the regions of Spirogyra algae that were bathed in red, blue, and violet light??

A:The bacteria were immobile and that is where Engelmann happened to place them.?

B: The most energy-rich wavelengths of light are found at the edges of visible and nonvisible light (ultra violet and infrared).?

?c: Photosynthesis is most active in those wavelengths of light and thus more oxygen is consumed by the algae in those regions.

D; Photosynthesis is most active in those wavelengths of light and thus more oxygen is produced by the algae in those regions.?

?e: Chlorophyll is green and thus reflects green light.

9; In any experiment, changes to the dependent variable based on the manipulations of the independent variable are measured. When determining the action spectrum of a given plant, what is the independent variable and what is the dependent variable??

A: independent = rate of O2 release in photosynthesis; dependent = wavelength?

B: ?independent = absorption of light; dependent = wavelength

C: independent = wavelength; dependent = rate of O2 release in photosynthesis?

D: independent = wavelength; dependent = absorption of light?

E: independent = rate of O2 release in photosynthesis; dependent = absorption of light?

10: Which plant structure is responsible for gas exchange??

A: stromal lamellae?

B: grana?

C: stomata?

?D: stroma

11: In order to elucidate the Calvin cycle, Calvin and his colleagues used two-dimensional paper chromatography to analyze the presence of different molecules under different conditions. What did they conclude from the accumulation of RuBP when CO2 levels were low??

A:	?CO2 serves as a non-competitive inhibitor of rubisco.

?B: RuBP is the last substrate to react in the Calvin cycle.

C: RuBP only reacts with CO2 when concentrations of ATP are low.?

D:	RuBP is the first substrate to react with CO2.?

e:	?RuBP only reacts with CO2 in the sunlight.

cyanporcupine115

1.When something appears blue, it is absorbing all colors except__________.

yellow

blue

red

green

orange

2.During heavy exercise, lactic acid can build up in ourmuscles. Why? How does this resemble the metabolism of bacteria andyeast?

lactic acid is results from insufficient oxygen during sugarmetabolism; it is fermentation

lactic acid accumulates when we are dehydrated; bacteria andyeast use the same pathway

lactic acid is built up from carbon dioxide; bacteria and yeaststore energy in this way

3.Why must a cell keep a similar concentration of dissolvedsubstances with the fluid surrounding them?

to avoid dilution of potential energy

to avoid osmotic imbalance and rapid gain or loss of water

to maintain the correct amount of dehydration and hydrolysis

4.What is entropy?

the amount of energy in a system

the amount of disorganization

the amount of organization

5.Burning a log is the reverse reaction found in photosynthesis.What products would be formed in burning a log?

carbon dioxide and water

glucose and oxygen

oxygen and carbon dioxide

oxygen and water

6.The main reason that cellular respiration needs to occur stepby step instead of a single, big reaction is

cells don't store enough oxygen

too much energy would be released for the cell to harness

cells don't have many mitochondria.

cells produce the enzymes needed for cellular respiration veryslowly

7.Enzymes are catalysts because they operate to:

raise activation energy

lower activation energy

supply activation energy

supply the reactants

8.When ATP powers a reaction it becomes ADP. The ADP

can reform ATP by an exergonic reaction

is a waste product for lysosomal breakdown

can reform ATP by an endergonic reaction

can reform ATP by an oxidation reaction

can reform ATP by an equilibrium reaction

9.The energy source that drives photosynthesis is

water

glucose

carbon dioxide

oxygen

sunlight

10. What is the process by which enzymes regulate their ownactivity?

osmosis

self-propulsion

feedback inhibition

11.Coupled reactions are reactions in which a

endergonic reaction drives a spontaneous reaction

exergonic reaction drives a spontaneous reaction

endergonic reaction drives an exergonic reaction

exergonic reaction drives an endergonic reaction

12.How is water used in photosynthesis?

as a substrate for ATP synthase

as an electron donor

to combine with ADP forming ATP

as an electron acceptor

13.Why are the âDark Reactionsâ of photosynthesis referred to asâDarkâ?

they do not require light

they can only occur at night

they generate excess sugar and the leaves turn brown

14.What is the difference between potential and kineticenergy?

potential is stored, kinetic is being used

potential is being used, kinetic is ready to be used

potential is negative, kinetic is positive

15.The products of cellular respiration are

carbon dioxide, water, and ATP

glucose, water, and ATP

glucose, carbon dioxide, and ATP

oxygen, ATP, and water

carbon dioxide, glucose, and water

16.All of the following are correct about energy except:

The biological world gets its energy from the sun.

Chemical bonds store potential energy.

A boulder perched on a hill has kinetic energy.

Energy is defined as the ability to do work.

All forms of energy can be converted to heat.

17.What is needed for the end product of glycolysis, pyruvate,to enter the citric acid cycle?

More glucose for energy

ATP

Oxygen

Carbon dioxide

18.The enzyme that forms a transmembrane channel in mitochondriaand phosphorylates ADP

a carrier protein

ATP synthase

acetyl CoA

19.Fermentation is most common in

plants

microorganisms

animals

20.During adsorption of sunlight by photosystems, H+ ions aregenerated. Where do they come from? What are they used for?

from the breakdown of sugar; they help form water

water; they help form sugar

from carbon dioxide; they help dissolve NaCl

21.Glycolysis

does not use oxygen

uses oxygen

uses carbon dioxide

22.Photosynthesis is

not dependent on chlorophyll

a process that produces glucose and oxygen

a process that produces water and carbon dioxide

23.Breakdown of glucose generates many ATP molecules, each ofwhich can be used independently. Why is ATP ideally suited to powerbiological reactions?

ATP has many hydrogen bonds

ATP has enough energy to power one biological reaction

ATP readily dissolves in water

24.Objects that are not actively moving but have the capacity todo so are said to possess:

kinetic energy

entropy

potential energy

living energy

25.The first stage of cellular respiration, called ___________,takes place in the cytoplasm of the cell and needs no oxygen.

photorespiration

citric acid cycle

glycolysis

oxidation

26.Diffusion

requires energy

utilizes proteins to move molecules across a membrane

moves molecules against a concentration gradient

does not require energy

cannot occur without a membrane present

27.What is the name of the molecule on which an enzymeworks?

substrate

monomer

polymer

28.ATP contains

phenylalanine

two phosphate groups

three nitrate groups

three phosphate groups

29.How does chlorophyll function in photosynthesis?

by absorbing carbon dioxide

by absorbing the sun's energy

by absorbing water

30.Objects that are moving are said to possess:

living energy

potential energy

entropy

kinetic energy

31.The respiration pathway that evolved first is probably

glycolysis

aerobic respiration

citric acid cycle

32.The energy source for the process of photosynthesis is

oxygen

sunlight

carbon dioxide

chlorophyll

glucose

33.Burning wood generates heat and light. What type of reactionis this?

exergonic

kinetic energy

endergonic

potential energy

equilibrium

34.What is meant by a âcoupled reactionâ in terms of energy?

many poymers are built simultaneously

energy released by one reactions powers another reaction

some reactions occur in the same organelle

35.The First Law of Thermodynamics states:

energy is constantly being created by entropy events

energy can be changed from one form to another, but cannot becreated or destroyed

energy can be used and then destroyed because of entropy'sactions on it

energy can be destroyed while it is producing entropy

36.How do we dispose of the carbon derived from the glucose thatis metabolized during respiration?

by breathing out

via our urine

it is broken down in lysosomes

37.Both plant and animal cells have mitochondria because theyboth

carry on respiration

carry on photosynthesis.

require water

38.What is Activation Energy?

the energy needed to initiate a reaction

the energy that transports water into cells

potential energy

39.If you put a plant in a chamber and shine a light on it

oxygen will decrease and carbon dioxide will increase

oxygen will increase and carbon dioxide will decrease

oxygen and carbon dioxide will increase

oxygen and carbon dioxide will decrease

40.What are the inputs and the output molecules for the overallphotosynthetic process?

input sugar and oxygen; output carbon dioxide and water

input oxygen and water; output sugar and carbon dioxide

input carbon dioxide and water;output sugar and oxygen

41.What kind of reaction is photosynthesis?

endergonic

kinetic energy

exergonic

potential energy

equilibrium

42.In the process of glycolysis, glucose is cleaved into a pairof three-carbon molecules called

lactate

pyruvate

acetyl CoA

ATP

alcohol

43.Entropy is

order

disorder

complexity

Both order and disorder are correct

Both complexity and disorder are correct

44.Glycolysis takes place in the _____________ and the citricacid cycle and electron transport chain take place in the___________.

cytoplasm; endoplasmic reticulum

mitochondria, chloroplast

mitochondria; cytoplasm

cytoplasm; mitochondria

45.The organelle that carries out photosynthesis in plants isthe

mitochondria

chloroplast

ribosome

chlorophylllysosome

46.The energy to power the Calvin cycle comes from

cellular respiration

oxygen

the light reactions of photosynthesis

47.Which of the following can be broken down into intermediateproducts that enter cellular respiration?

Proteins

Lipids

Carbohydrates

All of these.

48.When cellular product levels get too high, the responsibleenzyme is inhibited. This is an example of

promotion

denaturation

equilibrium

a coenzyme

feedback inhibition

49.How is respiration the opposite of photosynthesis?

respiration breaks sugar down to carbon dioxide; photosynthesisbuilds sugar from carbon dioxide

respiration builds sugar from carbon dioxide; photosynthesisbreaks sugar down to carbon dioxide

respiration requires energy input; photosynthesis gives offexcess energy

50.The molecule that absorbs sunlight for photosynthesis is

oxygen

carbon dioxide

chlorophyll

glucose

sunlight

amaranthbear841

Biology 1002B Chapter Notes - Chapter 6: Citric Acid Cycle, Cellular Respiration, Oxidative Phosphorylation

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